Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq56928 86.0 7e-12 seq47912 86.0 7e-12 seq210989 84.2 2e-11 >seq56928 Length=165322 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 95944 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 96003 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 96004 TGAGCTACGAGAGC 96017 >seq47912 Length=237011 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 151458 GATTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 151517 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||||||| Sbjct 151518 AACTGAGCTACGAAAGC 151534 >seq210989 Length=19462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 10/106 (9%) Strand=Plus/Minus Query 79705 GAACTCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATCCGGATTAGA 79764 ||| || |||||| |||| |||||||| ||||||||||||| || | ||| | | Sbjct 19089 GAAATCCGACCTGCCGGATTCGAACCAGCGACCTAAAGATGGCTCA-----CGGGTAA-- 19037 Query 79765 GCACACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810 ||| | | |||||||||| ||||||||||| |||||||||||| Sbjct 19036 ---CACACCCACTACAGTCTTCCGCTCTACCAACTGAGCTAAGGTC 18994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540857302198600