Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq316408 80.6 8e-11 seq277352 80.6 8e-11 seq271273 80.6 8e-11 seq67389 80.6 8e-11 seq21303 80.6 8e-11 seq12906 80.6 8e-11 seq7839 80.6 8e-11 >seq316408 Length=9579 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||| Sbjct 7363 AGGATTCGAACCTATGACCCTCTGTACCCAAAATAGATGCGCTGACCAGACTGCGCTACA 7422 Query 36341 C 36341 | Sbjct 7423 C 7423 >seq277352 Length=1738 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 481 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 540 Query 36341 C 36341 | Sbjct 541 C 541 >seq271273 Length=4736 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 2340 AGGATTCGAACCTAAGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 2281 Query 36341 C 36341 | Sbjct 2280 C 2280 >seq67389 Length=8347 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 2163 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 2222 Query 36341 C 36341 | Sbjct 2223 C 2223 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 4289 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 4348 Query 36341 C 36341 | Sbjct 4349 C 4349 >seq21303 Length=72147 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 64052 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 64111 Query 36341 C 36341 | Sbjct 64112 C 64112 >seq12906 Length=9230 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 5619 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 5678 Query 36341 C 36341 | Sbjct 5679 C 5679 >seq7839 Length=48921 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 5874 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 5815 Query 36341 C 36341 | Sbjct 5814 C 5814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152467708970252