Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05]
929,607 sequences; 2,689,351,490 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq19970 95.1 9e-15
seq53084 91.5 1e-13
seq914224 87.8 1e-12
seq131271 87.8 1e-12
seq1350 87.8 1e-12
seq10275 86.0 4e-12
seq39326 84.2 2e-11
>seq19970
Length=23264
Score = 95.1 bits (104), Expect = 9e-15
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || || ||||| ||| |||||| | || || || | | ||
Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | ||||| || ||| |||||| ||||| ||||| |||| || |
Sbjct 254 GACACTATTGACAAT--GTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATC 197
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
| ||| ||||||||||||| ||||||||| | || || | || | |||| | ||||||
Sbjct 196 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTG-CTGATTAC 138
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005
|| || || || || |||| | ||| | || ||||||
Sbjct 137 AATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGT 99
>seq53084
Length=45269
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/235 (69%), Gaps = 10/235 (4%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || |||||||| || || || || || || |||| |||||| |
Sbjct 6578 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 6637
Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
||||| ||||||| || || ||| || ||||| ||||| ||||
Sbjct 6638 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCAC 6692
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
||| ||||| ||| | ||||| ||||||||||| |||| || | || | | | | |
Sbjct 6693 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTG 6752
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||| || || |||| | |||||||| | ||| | ||||| ||
Sbjct 6753 ATTACAACATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 6807
>seq914224
Length=857
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| |||||| | |||||||| ||| || | || || |||||| |
Sbjct 279 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAAAGCTCA 338
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| || || ||| || ||||| ||||| |||| ||| |
Sbjct 339 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 396
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| |||| || ||||| ||||| ||| | || || | || | | | | || ||||
Sbjct 397 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 456
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||| ||| | || | ||| | ||||| ||||| ||
Sbjct 457 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTACGTGGTGG 505
>seq131271
Length=1147
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/230 (70%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || || ||||| || |||||| | || || || | | ||
Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | ||||| || ||| |||||| ||||| ||||| |||| || |
Sbjct 165 GACACTATTGACAAT--GTTAAAACAAAAATTCAAGACAAGGAAGGA-TTCCTCCAGATC 221
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
| ||| ||||||||||||| ||||||||| | || || | || | |||| | ||||||
Sbjct 222 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTG-CTGATTAC 280
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || || || |||| | ||| | || |||||| | || || ||
Sbjct 281 AATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 330
>seq1350
Length=82824
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| ||||| || ||||| || |||||| |||| ||||| ||| |
Sbjct 8679 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 8620
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| ||||| ||| || ||||| || ||| |||| || |
Sbjct 8619 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATC 8562
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966
| ||| |||| |||||||| || || ||| | || || | | | |||| | ||||||
Sbjct 8561 AACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTG-CTGATTAC 8503
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || ||| ||| | ||| | || | || | ||||||||
Sbjct 8502 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGCCTTCGTGGCGG 8453
>seq10275
Length=89473
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| || || |||||| || || |||| || |||||| |
Sbjct 10440 ATGCAGATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 10381
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | ||||| ||||| || || ||||| ||||| | || || |
Sbjct 10380 GACACTATCGACAAT--GTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATC 10323
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| |||| |||||||| || ||||| ||||| || | || | | | | |||||||
Sbjct 10322 AGCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGAACCCTAGCTGATTACA 10263
Query 27968 ACATCCAAAAAGAGAGCACTTTGCA 27992
||||||| || ||| ||||||||
Sbjct 10262 ACATCCAGAAGGAGTCGACTTTGCA 10238
>seq39326
Length=18362
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| ||||| || || |||||| || || |||| ||||||||| ||
Sbjct 8452 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 8393
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || |||| || | | | || | | || ||||| ||||| | || ||
Sbjct 8392 GACACAATTGACAA-CGTTAAGGCGAAGATTCAG--GACAAGGAAGGAATCCCACCAGAT 8336
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| |||| || ||||| || || || ||||| || | || | | | | ||||||
Sbjct 8335 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTAGCTGATTAC 8276
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| || || ||| | || ||||| | ||| | || ||||||
Sbjct 8275 AACATCCAGAAGGAATCAACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGC 8225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351830626579689
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |