Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19970 95.1 9e-15 seq53084 91.5 1e-13 seq914224 87.8 1e-12 seq131271 87.8 1e-12 seq1350 87.8 1e-12 seq10275 86.0 4e-12 seq39326 84.2 2e-11 >seq19970 Length=23264 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| ||| |||||| | || || || | | || Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || ||| |||||| ||||| ||||| |||| || | Sbjct 254 GACACTATTGACAAT--GTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATC 197 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| ||||||||||||| ||||||||| | || || | || | |||| | |||||| Sbjct 196 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTG-CTGATTAC 138 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || || || || || |||| | ||| | || |||||| Sbjct 137 AATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGT 99 >seq53084 Length=45269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 6578 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 6637 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| |||| Sbjct 6638 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCAC 6692 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| |||| || | || | | | | | Sbjct 6693 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTG 6752 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || |||| | |||||||| | ||| | ||||| || Sbjct 6753 ATTACAACATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 6807 >seq914224 Length=857 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | |||||||| ||| || | || || |||||| | Sbjct 279 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAAAGCTCA 338 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| ||| | Sbjct 339 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 396 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 397 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 456 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||| ||||| || Sbjct 457 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTACGTGGTGG 505 >seq131271 Length=1147 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || |||||| | || || || | | || Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || ||| |||||| ||||| ||||| |||| || | Sbjct 165 GACACTATTGACAAT--GTTAAAACAAAAATTCAAGACAAGGAAGGA-TTCCTCCAGATC 221 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| ||||||||||||| ||||||||| | || || | || | |||| | |||||| Sbjct 222 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTG-CTGATTAC 280 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || |||| | ||| | || |||||| | || || || Sbjct 281 AATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 330 >seq1350 Length=82824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| || |||||| |||| ||||| ||| | Sbjct 8679 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 8620 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| || ||| |||| || | Sbjct 8619 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATC 8562 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| |||| |||||||| || || ||| | || || | | | |||| | |||||| Sbjct 8561 AACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTG-CTGATTAC 8503 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| | || | || | |||||||| Sbjct 8502 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGCCTTCGTGGCGG 8453 >seq10275 Length=89473 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || |||||| || || |||| || |||||| | Sbjct 10440 ATGCAGATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 10381 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| || || ||||| ||||| | || || | Sbjct 10380 GACACTATCGACAAT--GTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATC 10323 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || ||||| ||||| || | || | | | | ||||||| Sbjct 10322 AGCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGAACCCTAGCTGATTACA 10263 Query 27968 ACATCCAAAAAGAGAGCACTTTGCA 27992 ||||||| || ||| |||||||| Sbjct 10262 ACATCCAGAAGGAGTCGACTTTGCA 10238 >seq39326 Length=18362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || || |||||| || || |||| ||||||||| || Sbjct 8452 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 8393 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | | | || | | || ||||| ||||| | || || Sbjct 8392 GACACAATTGACAA-CGTTAAGGCGAAGATTCAG--GACAAGGAAGGAATCCCACCAGAT 8336 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| || || || ||||| || | || | | | | |||||| Sbjct 8335 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTAGCTGATTAC 8276 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || || ||| | || ||||| | ||| | || |||||| Sbjct 8275 AACATCCAGAAGGAATCAACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGC 8225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351830626579689