Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20754 102 7e-17 seq368178 89.7 4e-13 seq368176 87.8 2e-12 seq19970 87.8 2e-12 seq53084 86.0 5e-12 seq918991 82.4 6e-11 seq131271 82.4 6e-11 >seq20754 Length=265263 Score = 102 bits (112), Expect = 7e-17 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || || || |||| ||| ||||| ||| || ||||| Sbjct 216138 AAATATCTGCATACCTCCCCTCAAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTAT 216197 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| |||||||| | | | || ||||| || || || |||||||| | ||||| Sbjct 216198 GTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTG 216257 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | || ||||| ||||| || | | | | || || Sbjct 216258 CTGGTCTGGGGGAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTC 216317 Query 39225 GCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||| ||| || |||| |||||| ||||||| |||| || || || |||||||| Sbjct 216318 ---CGAACTCTCAACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTG 216374 Query 39282 CAT 39284 ||| Sbjct 216375 CAT 216377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||||||| || || || || || ||||| ||||| Sbjct 216375 CATGCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC 216434 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | | | || ||||| ||||| || |||||||| | | ||||||||| | Sbjct 216435 TGCAAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGG 216494 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTC 39228 || | | ||| |||||| ||| || | || | |||| | ||||| |||| Sbjct 216495 AGGAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ATGGTATCTGAGCTC 216552 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || ||||| | ||||||||||| || ||||| Sbjct 216553 ---TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 216605 >seq368178 Length=4824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 3391 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCG 3450 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || |||||||||||||| | ||| | | || ||||| | Sbjct 3451 AGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 3510 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 3511 ATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTTA 3570 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 3571 CCCGTTAGGGTTTTGACGAAGATCTGCATCTT 3602 >seq368176 Length=2289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 868 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 927 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || ||||||||||| || | ||| | | || || || Sbjct 928 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 987 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| ||||| || || | ||||| |||| Sbjct 988 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGACTCAACCTCAAGGGTGATTGTTTT 1047 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 1048 ACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 1080 >seq19970 Length=23264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 39065 TTAAG-CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTT 39123 ||||| || ||||| | ||| || ||| || || || ||||| ||||| ||||||||| Sbjct 94 TTAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTT 153 Query 39124 CGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTC 39183 || | || ||||| ||||| || ||||| || | | || || || | || | | Sbjct 154 CGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCT 213 Query 39184 TCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCAC 39242 || |||| | ||| ||| ||||| | | | | | | || ||| ||| || || | Sbjct 214 TCCTTGT-CTTGAATTTTTGTTTTAACATTGTCAATAGTGTCGGAGTTCTCAACCTCGAG 272 Query 39243 CGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || ||||||| || || || ||||||||||||||||||| || Sbjct 273 TGTAATGGTTTTTCCAGTTAGTGTCTTAACAAAGATTTGCATCTGTA 319 >seq53084 Length=45269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || || || || || ||||| || || ||||| | || || Sbjct 6790 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 6731 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || ||||||||||| | || | || || |||||| Sbjct 6730 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 6671 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | || ||| || || || || | ||||| | | Sbjct 6670 GATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCT 6612 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || ||||| || ||||| |||||||| Sbjct 6611 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 6578 >seq918991 Length=1020 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 538 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 479 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 478 TCAGACGTTGCTGGTCCGGTGG 457 >seq131271 Length=1147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | ||| || ||| || || || ||||| ||||| ||||||||||| | Sbjct 318 CGCAACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTTCGACCA 259 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| ||||| || ||||| || | | || || || | || | || || ||| Sbjct 258 TCTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATCCT-TCCTTG 200 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| ||| ||||| | | | | | | || ||| ||| || || | || || Sbjct 199 T-CTTGAATTTTTGTTTTAACATTGTCAATAGTGTCGGAGTTCTCAACCTCGAGTGTAAT 141 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 | ||||| || || || ||||||||||||||||||| || Sbjct 140 GGTCTTTCCAGTTAGTGTCTTAACAAAGATTTGCATCTGTA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424679026479191