Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq19970 93.3 3e-14 seq131271 86.0 5e-12 seq19239 86.0 5e-12 seq22395 84.2 2e-11 seq20754 82.4 6e-11 >seq19970 Length=23264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084 ||||| | || | ||| ||||| || |||||||||||||| || ||| || || || Sbjct 103 AACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGC--AAGTGTTCGACCAT 160 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||| | |||||| || ||| | || | ||||||||| ||| || | ||||| |||| Sbjct 161 CTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGT 220 Query 101145 CGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT----TTCGACGGTA 101200 | ||||||| ||| |||| | | | || || ||| ||| | |||| ||| Sbjct 221 CTTGAATTTTTGTTTTAACATTGTCAATAGTGTC---GGA-GTTCTCAACCTCGAGTGTA 276 Query 101201 ATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||| || || | ||| |||| ||| |||||||| Sbjct 277 ATGGTTTTTCCAGTTAGTGTCTTAACAAAGATTTGCAT 314 >seq131271 Length=1147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/218 (70%), Gaps = 13/218 (6%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084 ||||| | || | ||| ||||| || |||||||||||||| || ||| || || || Sbjct 315 AACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGC--AAGTGTTCGACCAT 258 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||| | |||||| || ||| | || | ||||||||| ||| | | | ||||| |||| Sbjct 257 CTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCT-GGAGGAATCCTTCCTTGT 199 Query 101145 CGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT----TTCGACGGTA 101200 | ||||||| ||| |||| | | | || || ||| ||| | |||| ||| Sbjct 198 CTTGAATTTTTGTTTTAACATTGTCAATAGTGTC---GGA-GTTCTCAACCTCGAGTGTA 143 Query 101201 ATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || || || || | ||| |||| ||| |||||||| Sbjct 142 ATGGTCTTTCCAGTTAGTGTCTTAACAAAGATTTGCAT 105 >seq19239 Length=237608 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||| || ||||||||||| |||| |||| | Sbjct 131823 CTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGACCA 131882 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| ||||| || ||| | || ||||| || ||||| || | ||||||||| Sbjct 131883 TCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGTATCCCTTCTTTG 131942 Query 101144 TC 101145 || Sbjct 131943 TC 131944 >seq22395 Length=162664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||| || || || |||||||||||||| || | || | ||| ||||| || || || Sbjct 26663 AGTAGACTCCTTCTGAATATTGTAATCTGCAAGTGTCCTACCATCCTCCAACTGCTTCCC 26722 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | |||||||| ||||||||| || | || || || || ||| || || Sbjct 26723 AGCAAAGATAAGCCTCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGAATCTTCGCCTT 26782 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 ||||| | | | ||| |||| | | ||| | || || ||||| ||||| || || Sbjct 26783 CACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGT 26842 Query 101221 TTTAATAAAAATTTGCATT 101239 ||||| ||| ||||||||| Sbjct 26843 TTTAACAAAGATTTGCATT 26861 >seq20754 Length=265263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | |||||||| || |||||||||||||| || | || | ||| || Sbjct 216396 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 216455 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | |||||| || ||| |||| | ||| || |||||| || | || || ||||| Sbjct 216456 AAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 216515 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || ||| || |||| | | | || |||| | | ||| | ||| || || || Sbjct 216516 GATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 216575 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||| || ||||||| |||||| ||||| Sbjct 216576 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 216605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405019513017213