Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq508016 163 2e-35 >seq508016 Length=803 Score = 163 bits (180), Expect = 2e-35 Identities = 361/538 (67%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 4583 AATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT 4642 ||||| ||||| || || |||||||| |||||||| || | |||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 4643 AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGA 4702 ||| || |||||||| || || ||||| || ||||| || || || || Sbjct 735 AGCACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTC 676 Query 4703 CCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC 4762 | | || | || ||| ||||| || ||||| || || || |||| ||| Sbjct 675 CGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAAC 619 Query 4763 GCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATA 4822 || || || || | | ||| || ||| | |||||||| | ||| | || || Sbjct 618 ACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGTA 559 Query 4823 AGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCC 4882 | |||| || || || ||||| || ||||| || ||||| || || || || || || Sbjct 558 CGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCC 499 Query 4883 GTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTT 4941 ||| |||||| | || || | ||||| ||||| || || ||| | ||| ||||| Sbjct 498 GTAGAAAGCA-CGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTT 440 Query 4942 CGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTT 5001 | || || ||||| ||| || ||||| || | ||||||| || || | | || Sbjct 439 CTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTT 380 Query 5002 CGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAG 5061 || | || | || ||| |||||| | |||| || |||||| ||||| ||| ||| Sbjct 379 CGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAG 320 Query 5062 TCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| || || ||| |||||||||||||| |||||| | || || ||||| || Sbjct 319 TCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGG 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422211305124131