Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq80028 96.9 5e-15 seq14524 91.5 2e-13 >seq80028 Length=5765 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 77882 AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 |||||||| | | |||||||||||| | ||||| | | ||||| || || ||||| Sbjct 322 AGATTTGTTTTTAC-CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 264 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 | ||| |||||||||| ||| |||| || | || ||||| | ||| | | | || Sbjct 263 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGACCGT-TGCTTT 205 Query 78002 -AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 |||| || |||||| |||||||| | ||| |||||| || |||||||||| | || Sbjct 204 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCACGAT 145 Query 78061 GTTCTTC 78067 ||||||| Sbjct 144 GTTCTTC 138 >seq14524 Length=135311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 88910 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 88969 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||| | || | ||||| | || | ||| || || || || | ||| | ||||| Sbjct 88970 GTATGTCTTGATGACAGATTCAACATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 89028 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 89029 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 89088 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| || || || || Sbjct 89089 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 89137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686596687760480