Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14524 104 3e-17 seq80028 96.9 5e-15 seq908713 84.2 3e-11 >seq14524 Length=135311 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 88910 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 88969 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||| | || || | ||| | ||| | ||| || || || |||| || | ||||| Sbjct 88970 GTATGTCTTGATGACAGATTCAACATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 89028 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| | || || || | ||| || | || | Sbjct 89029 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 89088 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| || || || || Sbjct 89089 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 89137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | |||||| ||||||| ||| | || | || ||| |||| ||| || Sbjct 88488 ACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCC 88547 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||| ||||| ||| ||||| || || | ||| Sbjct 88548 ATTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGA 88607 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| || || ||| || | |||||| || | || ||||| || Sbjct 88608 AACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATAT 88667 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| || || ||||| | || || |||||| Sbjct 88668 ACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 88710 >seq80028 Length=5765 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | |||||| ||| ||||| || || |||||| ||| |||| || Sbjct 308 CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCAACAATCTGCCAATCC 249 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 |||| ||| | ||||| | || ||||| | ||| | | | || || | || ||||| Sbjct 248 AGGAGCCTCACTTGGACAAAATAAAGACCATTGACCGT-TGCTTTGGACTCTTTCCATAA 190 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 | |||||||| | ||| |||||| || |||||||||| | | ||||||| Sbjct 189 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCACGATGTTCTTC 138 >seq908713 Length=735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 587 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 646 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | || | | ||| ||||| | ||| || ||||| |||| || | ||||| Sbjct 647 ATAAGTCTTGATGGCAGATTCGATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 705 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||| || || | ||||||| Sbjct 706 ACATATGTTGTGGCCTTTCTACA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704650039890240