Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq302002 143 3e-29 seq501709 125 7e-24 seq455599 120 3e-22 seq524659 114 1e-20 seq727007 93.3 4e-14 seq559358 91.5 2e-13 >seq302002 Length=2659 Score = 143 bits (158), Expect = 3e-29 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| ||||||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 117 TCTCACTCTGTCACCCAGGCTGTAGTGCAGTGGCACGATCTTGGGTCACTGCAACCTCCG 58 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460 ||| || ||||||||| ||||| | |||||||||||| ||||||||||| ||||||| Sbjct 57 CCTGCCAGGTTCAAGCAATTCTTCCGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGG 1 >seq501709 Length=728 Score = 125 bits (138), Expect = 7e-24 Identities = 117/145 (81%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| || ||||||| |||||| | |||| | |||| |||||| ||| ||||||| Sbjct 585 TCACTCTTGTCGCCCAGGGTGGAGTACGATGGCG-GCTCTCGGCTCACCGCACCCTCCGC 643 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCC-TCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| |||||||| ||||||||||||||||| ||| |||||||||| || |||| | Sbjct 644 CTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCCCGAGTAGCTGGAATGACAGAGAT 703 Query 8464 AAGCCACCACGCCAAGCTAATTTTT 8488 ||||| | ||| |||||||||| Sbjct 704 GAGCCATCGTGCCCGGCTAATTTTT 728 Score = 100 bits (110), Expect = 3e-16 Identities = 94/118 (80%), Gaps = 5/118 (4%) Strand=Plus/Plus Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCC----ACC 8562 ||||| | ||||||| ||| |||||||||||||||||| ||||| | |||| || Sbjct 101 GGGTTCTATCATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCAATCCGCCTGCC 160 Query 8563 TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC-CCTT 8619 |||||||||| |||| | ||||| ||||||||| |||| | | ||||||||| |||| Sbjct 161 TGCCTCGGCCGCCCACACTGCTGCTATTACAGGCGTGAGACGCTGCGCCTGGCTCCTT 218 >seq455599 Length=1516 Score = 120 bits (132), Expect = 3e-22 Identities = 110/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 8482 AATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT 8541 || |||| ||||| |||| ||| ||||||||| |||||| ||||||||||||||| Sbjct 910 AAGTTTTCTATTTCGAGTAAAGACGTAATTTCACCATTTTGGCCGGGCTGGTCTCGAACT 969 Query 8542 CCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG--TGCTGGGATTACAGGCATG 8599 || ||||| ||||||| || ||||||||||||||||| |||||||| ||||| || Sbjct 970 CCCGACCT--AGTGATCCGCCCGCCTCGGCCTCCCAAAGACTGCTGGGAGTACAGATGTG 1027 Query 8600 AGCCACCGCGCCTGGCC 8616 ||||||| ||| |||| Sbjct 1028 AGCCACCATGCCCGGCC 1044 >seq524659 Length=408 Score = 114 bits (126), Expect = 1e-20 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||||||||||||||| ||||||| |||||||| |||||| |||||| Sbjct 260 CTCTGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGGAACCTCTGCCTCC 319 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGC 8436 ||||||||| ||||||||| |||||| Sbjct 320 TGGGTTCAAGTGATTCTCCTGTCTCAGC 347 >seq727007 Length=259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 8500 AGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCC 8559 || || || ||||||| | ||||||||| |||||| || ||| | |||| |||||||| Sbjct 259 AGTGACAGCGTTTCACTGTATTGGCCAGGATGGTCTTGATCTCTTTACCT--TGTGATCC 202 Query 8560 ACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGC 8602 | ||||| ||||||| || |||||||||||||||| ||||| Sbjct 201 CCTTGCCTTGGCCTCCAAATTTGCTGGGATTACAGGCCTGAGC 159 >seq559358 Length=205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| ||||||||| |||||||||| ||||| | ||||||||||||||| Sbjct 80 TCTCACTCTGTCACCCAGGCTGTAGTGCAGTGGTGCGATCTTGGGTCACTGCAACCTCCG 21 Query 8404 CCTCCCGGGTTCAAGCTATT 8423 ||| || ||||||||| ||| Sbjct 20 CCTGCCAGGTTCAAGCAATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515428263809800