Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq178615 93.3 3e-14 seq238297 82.4 5e-11 >seq178615 Length=36453 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| | |||||| || || | || ||| |||||||||||||||||||| Sbjct 8444 AGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCAATGTTAAATGGCACTCC 8385 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || |||||||| || || | ||||||| ||||||||| | || |||| ||||| Sbjct 8384 CAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATA 8325 Query 101872 AAATTG 101877 ||| || Sbjct 8324 AAACTG 8319 >seq238297 Length=50983 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||| |||||||| || | | | ||| |||||||||||||||||||| | Sbjct 25146 ACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCACTCCCAGA 25205 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| |||| ||||||| |||||||| Sbjct 25206 CCCATATCAGCAGATCGCTGATACATCTGACAGGA 25240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360133262779418