Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq146937 95.1 1e-14 seq196472 91.5 1e-13 seq72314 91.5 1e-13 seq179153 87.8 2e-12 seq184254 84.2 2e-11 seq58802 82.4 7e-11 >seq146937 Length=209544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| || || || ||||| || ||| ||| ||| | | Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||||| ||||| || || | || ||| || Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || ||| |||||||| | || | || ||||||||| Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 83575 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||||||| ||||| Sbjct 83576 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 83605 >seq196472 Length=12654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| || ||||| |||||||| || ||| || | | Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 8443 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 8502 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || || || |||| ||| | || |||| |||||||| Sbjct 8503 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 8562 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| |||||||| ||||| || || | ||||| Sbjct 8563 TATCCAGAAGGAGTCTACACTCCATCTTGTGTT 8595 >seq72314 Length=63918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || || || ||||||||||| ||| || | | Sbjct 55001 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 55060 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||| ||||| |||||| | || ||| || Sbjct 55061 GGACACAATTGATAATGTTAAGACGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 55120 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || ||||| || || ||| | |||||| | |||| |||| ||||| || Sbjct 55121 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 55180 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| ||||||||| Sbjct 55181 CATCCAGAAGGAATCCACTCTTCAC 55205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| ||||| || ||||| || || ||| ||| | | Sbjct 54774 ATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTCG 54833 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || ||||| ||||| ||||| |||||| | || ||||||| Sbjct 54834 GACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATACCACCAGATCAA 54893 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || ||||| || || ||| ||| | || ||||||||| Sbjct 54894 CAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAAT 54953 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| || || || ||| Sbjct 54954 ATTCAGAAGGAGTCAACACTCCAC 54977 >seq179153 Length=7583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || || ||||| | || |||||||||||| | || ||||| || || Sbjct 4671 AAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 4612 Query 29105 ACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162 |||||| || ||| || || ||| || ||||||||||| ||||||||||| ||||| Sbjct 4611 ACAACTCGAGGATGGTCGAACACTT--GCTGATTACAATATCCAGAAGGAATCCACTCTC 4554 Query 29163 CACATGGTGTTACGATTACGAGGAGGGTA 29191 || | ||||| || | || ||||| || Sbjct 4553 CATCTTGTGTTGCGTCTTCGCGGAGGTTA 4525 >seq184254 Length=183585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 180576 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 180635 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| ||||||||||||||||| ||||| ||||||||| | || || Sbjct 180636 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTT 180694 >seq58802 Length=2471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | || |||||||| || || || || ||| || ||| | || Sbjct 1924 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCA 1983 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| || ||||| ||||| |||| |||||| Sbjct 1984 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATGCCACCAGATCAG 2043 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| | || | || || |||||| Sbjct 2044 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAAT 2103 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || ||||| || ||||||||||| Sbjct 2104 ATCCAGAAAGAGTCTACTCTTCA 2126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427010460438290