Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 91.5 1e-13
seq146937 91.5 1e-13
seq72314 87.8 1e-12
seq184254 84.2 2e-11
>seq196472
Length=12654
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| ||| | ||||| || ||||| |||||||| || ||| || | |
Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| ||| | | | || | ||| || || |||||||||||| | || || ||
Sbjct 8443 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 8502
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| || || |||||||| || || || ||||| ||| | || |||| ||||||||
Sbjct 8503 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 8562
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||| || ||||| ||||| || || | |||||
Sbjct 8563 TATCCAGAAGGAGTCTACACTCCATCTTGTGTT 8595
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| || ||| | || |||||| |||||| | || ||||| || |||||||| |||
Sbjct 8249 GATAAGGAGGGTATCCCACCAGATCAGCAAAGATTGATTTTTGCAGGGAAACAATTAGAA 8308
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | |||| |||| ||||| || ||||||||||| || || || |||
Sbjct 8309 GATGGAAGAACTCTGGCTGATTATAACATTCAAAAGGAGTCGACACTCCAC 8359
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178
|||||| ||||| |||||| | || || |||||||| || || ||||| || ||
Sbjct 7784 AAAATTCAAGATAAGGAAGGTATTCCACCGGACCAACAAAGGCTGATTTTTGCTGGGAAG 7843
Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
|||||||||||| ||| |||| ||||| |||||||||||||| || || || |||
Sbjct 7844 CAATTGGAAGATGGGCGCACTCTGGCAGATTATAATATTCAAAAGGAGTCAACGCTCCAC 7903
>seq146937
Length=209544
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| ||||||| || || || ||||| || ||| ||| ||| | |
Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| ||||| ||||| || || | || ||| ||
Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || ||||| || || |||||||||||| | || | || |||||||||
Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 83575
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||| ||||| || ||||||||| |||||
Sbjct 83576 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 83605
>seq72314
Length=63918
Score = 87.8 bits (96), Expect = 1e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| || ||| | || ||| || || ||||| || ||||| || ||||||||||||
Sbjct 55323 GATAAGGAGGGTATTCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 55382
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | ||| | || ||||| ||||||||||||||||| || ||||||
Sbjct 55383 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 55433
>seq184254
Length=183585
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||||||||| | || ||||| || ||||| || ||||| || ||||| ||||||
Sbjct 180576 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 180635
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||| || |||| |||||||||||||| || ||||| ||||||||| | || ||
Sbjct 180636 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTT 180694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409525537696052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |