Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq140002 116 5e-21 seq198291 109 8e-19 seq196472 105 1e-17 seq179153 98.7 1e-15 seq242921 96.9 5e-15 seq72314 96.9 5e-15 seq184254 95.1 2e-14 seq182928 86.0 9e-12 seq28647 86.0 9e-12 >seq140002 Length=100703 Score = 116 bits (128), Expect = 5e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || ||||| || || | |||||||| || ||| ||||| || |||||| Sbjct 55301 GTAGATTCCTTTTGGATATTGTAGTCGGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCA 55242 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 55241 GCAAAGATCAACCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTG 55195 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || | |||| ||| | ||| ||||| || ||||| || || | | Sbjct 55787 CCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 55728 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| ||||||||||| ||||| || |||||||| |||||| Sbjct 55727 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 55668 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 55667 ATGCCTTCTTTATCCTG 55651 >seq198291 Length=74715 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || ||||| |||| || | || |||||||| ||||| ||||| Sbjct 28681 GTTCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 28622 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || |||||||||||||||||||| || |||||||| ||| Sbjct 28621 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATCAGGA 28562 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 28561 GGTATCCCTTCTTTGTCCTG 28542 >seq196472 Length=12654 Score = 105 bits (116), Expect = 1e-17 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||||||||||| ||||| | | ||| || ||||| || |||||||||| Sbjct 7888 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAA 7830 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 7829 TCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCTTTAACGTTAT 7770 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 ||| || | || || ||||| | |||||||||||| || || ||||| |||| | Sbjct 7769 CAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACAA 7710 Query 146268 ATATTTGCATT 146278 ||||||||||| Sbjct 7709 ATATTTGCATT 7699 Score = 96.9 bits (106), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || |||||||| | |||||||| | ||| ||||||||||| || ||||||| Sbjct 8344 CTTTTGA-ATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGTTTCCCTGCAAAAA 8286 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || || || || || ||||| || Sbjct 8285 TCAATCTTTGCTGATCTGGTGGGATACCCTCCTTATCCTG 8246 >seq179153 Length=7583 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | ||| ||||| || ||||| ||||| | ||| |||| | ||| Sbjct 4543 AACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCAAGTGTTCGACCATCC 4602 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||||||||||||||| || ||||| ||||| |||||||||||||| || ||| Sbjct 4603 TCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCT 4662 Query 146186 TG 146187 || Sbjct 4663 TG 4664 >seq242921 Length=127737 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || || || ||||||||||| | ||| || || | ||| || Sbjct 49999 ACCAAATGCAGTGTGGACTCCTTCTGGATATTATAATCAGCAAGGGTCCTCCCATCCTCA 49940 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | || || |||||||| ||||||| ||||||||||| ||||| |||||||||||||| Sbjct 49939 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCCGGTGGAATCCCTTCTTTATCTTGG 49880 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| |||||||| || || | |||||||| || Sbjct 49879 ATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCGACCTCCAAGGTGATTGTCTTC 49820 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| ||||| || | || || ||||| Sbjct 49819 CCTGTCAATGTCTTCACAAAGATCTGCAT 49791 >seq72314 Length=63918 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/199 (68%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| ||||| || || |||||||| | |||||||| | ||| |||||||| || || Sbjct 55199 AGTGGATTCCTTCTGGATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGCTTCCC 55140 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 ||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 55139 AGCAAAAATCAGCCTCTGCTGGTCTGGCGGGATACCTTCCTTATCTTGGATTTTCGTCTT 55080 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 || || || || || ||||| | ||| || ||||| |||||||| || Sbjct 55079 AACATTATCAATTGTGTCCGAGCTCTCAACTTCCAATGTAATGGTTTTCCCTGTTAAGGT 55020 Query 146260 TTTAATGAATATTTGCATT 146278 ||||| || ||||||||| Sbjct 55019 TTTAACAAAGATTTGCATT 55001 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/191 (69%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || ||||| || | |||||| || | ||| || |||||||| || ||||||| Sbjct 55646 CTTTTGA-ATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAA 55588 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| || ||||||||||| ||||| ||||| |||||||| Sbjct 55587 TCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTGT 55528 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 || || || || || ||||| | ||||||||||| || ||||| || |||| | Sbjct 55527 CAATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAA 55468 Query 146268 ATATTTGCATT 146278 | ||||||||| Sbjct 55467 AGATTTGCATT 55457 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | || ||||| ||| || |||||||||||| Sbjct 55458 TTCCACCCCTTAGCCTAAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 55400 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 55399 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 55340 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||| || Sbjct 55339 GGAATACCCTCCTTATCCTG 55320 >seq184254 Length=183585 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | ||| |||||||| ||||| ||||| Sbjct 180712 GTTCCTCCCCTGAGCCTCAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTGTAATCA 180653 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| || || ||||| ||||||||||||| ||| |||||||| ||| Sbjct 180652 GCCAGGGTCCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 180593 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 180592 GGTATGCCTTCTTTATCCTG 180573 >seq182928 Length=15200 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || | ||||||||| ||||| || | ||| || |||||||||||||| ||| Sbjct 4561 ATGTTGTAGTCAGCAAGAGTTCTACTATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTT 4502 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||| || || ||||| || Sbjct 4501 TGTTGATCAGGAGGAATACCCTCCTTATCCTG 4470 >seq28647 Length=54725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | ||| |||| | ||| || | ||||||||||||| |||| || ||| Sbjct 9636 ATGTTATAATCAGCAAGTGTTCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTT 9577 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || || || |||||||||||||| || ||||| Sbjct 9576 TGTTGGTCTGGAGGAATTCCTTCCTTGTCTTG 9545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741166465794560