Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq118536 152 5e-32 >seq118536 Length=58152 Score = 152 bits (168), Expect = 5e-32 Identities = 575/893 (64%), Gaps = 23/893 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 25741 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 25682 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCG 16045 | ||| ||| ||||| ||||||| ||||| | || || | ||| ||||| Sbjct 25681 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCT--GAGCATT-GTACAGCTTATCA 25625 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| |||||||| ||||| ||||| || || | |||| ||||| Sbjct 25624 TAACCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCT 25565 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | |||||||| | | | ||| | || || | ||| | ||||||| | Sbjct 25564 CCATTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCC 25505 Query 16166 ACCGCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG 16219 || || || || ||| || ||| | | || || | | | |||| || Sbjct 25504 ACAGCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAA 25448 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 | || || |||||| |||||||| ||||| ||||||||||| ||||||||| Sbjct 25447 CTATAAAGCAA---ACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCG 25391 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || || || || | || ||||||| || || ||||| | ||| |||||||| || Sbjct 25390 TTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAG 25331 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 ||||| || || |||||||| || ||||| |||||||| ||||| | | ||| Sbjct 25330 CTTCCAGAGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTT 25271 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | || || ||||| | ||||| || || || | | ||||||| || Sbjct 25270 ---TCGGAACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATA 25214 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| | ||| ||||| ||||||| | || || || | |||| Sbjct 25213 GTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGA 25154 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578 || | ||| ||||| || || || || || || || || || || || || || |||||| Sbjct 25153 AGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 25094 Query 16579 TCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638 | || |||| | ||| ||||| |||||| | |||| |||||| ||| || Sbjct 25093 -CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGAT 25035 Query 16639 TCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698 || || || || ||||| ||||| | ||| | || |||| |||| | Sbjct 25034 GCCGTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGT 24975 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || || ||||| | ||| ||||||||||| ||||| ||||||| ||||| Sbjct 24974 TAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGA 24915 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 24914 GGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 24862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461043998474800