Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 152 5e-32
>seq118536
Length=58152
Score = 152 bits (168), Expect = 5e-32
Identities = 575/893 (64%), Gaps = 23/893 (3%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || || ||||| || | ||||||||| ||||||||||| || || |||
Sbjct 25741 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 25682
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCG 16045
| ||| ||| ||||| ||||||| ||||| | || || | ||| |||||
Sbjct 25681 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCT--GAGCATT-GTACAGCTTATCA 25625
Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105
| ||||| | ||| |||||||| ||||| ||||| || || | |||| |||||
Sbjct 25624 TAACCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCT 25565
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
| |||||||| | | | ||| | || || | ||| | ||||||| |
Sbjct 25564 CCATTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCC 25505
Query 16166 ACCGCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG 16219
|| || || || ||| || ||| | | || || | | | |||| ||
Sbjct 25504 ACAGCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAA 25448
Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279
| || || |||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct 25447 CTATAAAGCAA---ACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCG 25391
Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339
|| || || || | || ||||||| || || ||||| | ||| |||||||| ||
Sbjct 25390 TTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAG 25331
Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399
||||| || || |||||||| || ||||| |||||||| ||||| | | |||
Sbjct 25330 CTTCCAGAGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTT 25271
Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459
| || || ||||| | ||||| || || || | | ||||||| ||
Sbjct 25270 ---TCGGAACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATA 25214
Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519
|||| | ||| ||||| ||||||| | || || || | ||||
Sbjct 25213 GTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGA 25154
Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578
|| | ||| ||||| || || || || || || || || || || || || || ||||||
Sbjct 25153 AGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 25094
Query 16579 TCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638
| || |||| | ||| ||||| |||||| | |||| |||||| ||| ||
Sbjct 25093 -CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGAT 25035
Query 16639 TCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698
|| || || || ||||| ||||| | ||| | || |||| |||| |
Sbjct 25034 GCCGTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGT 24975
Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758
|| || ||||| | ||| ||||||||||| ||||| ||||||| |||||
Sbjct 24974 TAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGA 24915
Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
|| | || ||||| ||||||| ||| || | | ||| ||| || ||||
Sbjct 24914 GGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 24862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461043998474800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |