Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq72314 111 1e-19
seq196472 107 1e-18
seq184254 91.5 1e-13
seq182928 89.7 4e-13
seq198291 84.2 2e-11
seq146937 82.4 6e-11
>seq72314
Length=63918
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| ||
Sbjct 55685 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 55626
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | ||||||||||||||| || ||| | || || || || |||||| ||
Sbjct 55625 AAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGTGG 55566
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||||||||| ||||| ||| || | ||| ||||| | |||
Sbjct 55565 AATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAAC 55506
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||| |||| || || || || || ||||| |||||||||
Sbjct 55505 TTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 55457
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| |||||||| || || ||||| ||||| || ||
Sbjct 55001 TCCACCACGGAGACGAAGAACAAGGTGGAGTGTTGACTCCTTCTGAATATTGTAATCCGC 54942
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||| || | ||||| || ||| |||| | | ||||||||| ||
Sbjct 54941 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 54882
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275
| ||||||||||| |||| ||| || | ||| |||| ||| || |||
Sbjct 54881 TATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 54824
Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||||| |||| || ||||| ||||| ||||||||||||||
Sbjct 54823 ACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTTTAACAAAAATTTGCAT 54774
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| ||| || || || | ||| || ||||| || ||||||||||| || || ||
Sbjct 54772 CCACCCCTTAGCCTGAGAACTAGGTGGAGGGTTGACTCCTTTTGAATGTTATAATCTGCG 54713
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||||||||| || ||| | || || || || |||||| ||
Sbjct 54712 AGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGCGGG 54653
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGG 18276
| || ||||| || ||||| ||| || | | | |||| ||| || ||
Sbjct 54652 ATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTATCTATCGTGT--CCGAGCTTTCAA 54595
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| |||| || || || ||||| ||||| || |||||
Sbjct 54594 CTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATCTGCAT 54546
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| ||| ||||| || | |||||| || ||||| |||||||| || || || ||
Sbjct 55457 TCCACCCCTTAGCCTAAGAACAAGGTGAAGGGTGGATTCCTTTTGAATATTATAATCTGC 55398
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | ||||||||||||||| || ||| | || ||||| || || || ||
Sbjct 55397 GAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 55338
Query 18218 CACGCCTTCCTTATC 18232
| || ||||||||
Sbjct 55337 AATACCCTCCTTATC 55323
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156
|||| |||| || || || || | || || || || || || || || ||||||||||
Sbjct 55914 ATCCACCCCTCAGCCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGG 55855
Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216
||| ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| |
Sbjct 55854 CCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTG 55795
Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| | || |||||||| || | ||| || | ||| ||||| | |||
Sbjct 55794 GAATTCCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 55735
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| | || || || || ||||| || || |||||||||
Sbjct 55734 CTTCCAGTGTGATGGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCATT 55685
>seq196472
Length=12654
Score = 107 bits (118), Expect = 1e-18
Identities = 167/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| || ||||| || |||||||| || || || ||
Sbjct 7927 TCCACCACGAAGGCGAAGGACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGC 7868
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | |||||||||||| || || ||| | || || |||||||| ||| ||
Sbjct 7867 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGG 7808
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTC-- 18274
| ||||||||||| ||||| | || || || | ||| ||||| ||| ||||
Sbjct 7807 AATACCTTCCTTATCTTGAATTT-TCGCTTTAACGTTATCAATAGTGT--CCGTGCTCTC 7751
Query 18275 -GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| |||| ||||| |||| || |||||||| || ||||| |||||||||
Sbjct 7750 AACTTCCAAT-GTGATTGTTTTTCCAGTCAATGTCTTAACAAATATTTGCATT 7699
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| ||||| || || ||||||||||| || || ||
Sbjct 8383 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTCGACTCCTTTTGAATGTTATAATCAGC 8324
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| ||| | | |||||| |||||||| || ||| | || | |||||| ||||| ||
Sbjct 8323 CAGAGTTCTTCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGCTGATCTGGTGG 8264
Query 18218 CACGCCTTCCTTATC 18232
| || ||||||||
Sbjct 8263 GATACCCTCCTTATC 8249
>seq184254
Length=183585
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || | || | |||||| ||||||||||| ||||| ||||| || ||
Sbjct 180710 TCCTCCCCTGAGCCTCAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTGTAATCAGC 180651
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || || ||||||||| ||||| || ||| | || ||||| || ||||| ||
Sbjct 180650 CAGGGTCCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 180591
Query 18218 CACGCCTTCCTTATC 18232
| |||||| |||||
Sbjct 180590 TATGCCTTCTTTATC 180576
>seq182928
Length=15200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | |||||| || || || || || ||||||||||| || | ||| ||| ||||
Sbjct 4591 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACTATCT 4532
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||| ||||| ||| | || | ||||||||||| || | || ||||||||
Sbjct 4531 TCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCC 4472
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | ||| ||||| | |||| |||| || || |
Sbjct 4471 TGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCGACCTCAAGCGTAATAGTC 4412
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| ||||||| ||||| ||||| ||||||||
Sbjct 4411 TTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 4380
>seq198291
Length=74715
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || | |||| |||||||||||||||||| || || ||||| || ||
Sbjct 28679 TCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGC 28620
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211
|| ||| || ||||||||| ||||| || ||| | || | || || |||||
Sbjct 28619 CAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATC 28566
>seq146937
Length=209544
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| |||||| || || || || ||||| ||||| || ||
Sbjct 83623 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGC 83564
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | |||||||||||| || || ||| | || | ||||| || || ||
Sbjct 83563 TAAGGTCCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 83504
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || |||||||| |||| ||| || | ||| |||||| | |||
Sbjct 83503 GATTCCCTCCTTATCCTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTTTCGAC 83444
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||||| |||| || || || ||||| || ||||| |||||
Sbjct 83443 TTCAAGGGTGATTGTTTTCCCAGTTAAGGTTTTGACGAAAATCTGCAT 83396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378170072336910
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