Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq72314 111 1e-19 seq196472 107 1e-18 seq184254 91.5 1e-13 seq182928 89.7 4e-13 seq198291 84.2 2e-11 seq146937 82.4 6e-11 >seq72314 Length=63918 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 55685 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 55626 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || || || || |||||| || Sbjct 55625 AAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGTGG 55566 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||||| ||| || | ||| ||||| | ||| Sbjct 55565 AATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAAC 55506 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || || || || || ||||| ||||||||| Sbjct 55505 TTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 55457 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || || ||||| ||||| || || Sbjct 55001 TCCACCACGGAGACGAAGAACAAGGTGGAGTGTTGACTCCTTCTGAATATTGTAATCCGC 54942 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 54941 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 54882 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 54881 TATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 54824 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || ||||| ||||| |||||||||||||| Sbjct 54823 ACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTTTAACAAAAATTTGCAT 54774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||| || || || | ||| || ||||| || ||||||||||| || || || Sbjct 54772 CCACCCCTTAGCCTGAGAACTAGGTGGAGGGTTGACTCCTTTTGAATGTTATAATCTGCG 54713 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| | || || || || |||||| || Sbjct 54712 AGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGCGGG 54653 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGG 18276 | || ||||| || ||||| ||| || | | | |||| ||| || || Sbjct 54652 ATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTATCTATCGTGT--CCGAGCTTTCAA 54595 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || || ||||| ||||| || ||||| Sbjct 54594 CTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATCTGCAT 54546 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| ||| ||||| || | |||||| || ||||| |||||||| || || || || Sbjct 55457 TCCACCCCTTAGCCTAAGAACAAGGTGAAGGGTGGATTCCTTTTGAATATTATAATCTGC 55398 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || ||||| || || || || Sbjct 55397 GAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 55338 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 55337 AATACCCTCCTTATC 55323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||| |||| || || || || | || || || || || || || || |||||||||| Sbjct 55914 ATCCACCCCTCAGCCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGG 55855 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 ||| ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| | Sbjct 55854 CCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTG 55795 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | || |||||||| || | ||| || | ||| ||||| | ||| Sbjct 55794 GAATTCCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 55735 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || || || ||||| || || ||||||||| Sbjct 55734 CTTCCAGTGTGATGGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCATT 55685 >seq196472 Length=12654 Score = 107 bits (118), Expect = 1e-18 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| || || || || Sbjct 7927 TCCACCACGAAGGCGAAGGACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGC 7868 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||| || || ||| | || || |||||||| ||| || Sbjct 7867 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGG 7808 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTC-- 18274 | ||||||||||| ||||| | || || || | ||| ||||| ||| |||| Sbjct 7807 AATACCTTCCTTATCTTGAATTT-TCGCTTTAACGTTATCAATAGTGT--CCGTGCTCTC 7751 Query 18275 -GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| || |||||||| || ||||| ||||||||| Sbjct 7750 AACTTCCAAT-GTGATTGTTTTTCCAGTCAATGTCTTAACAAATATTTGCATT 7699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| ||||| || || ||||||||||| || || || Sbjct 8383 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTCGACTCCTTTTGAATGTTATAATCAGC 8324 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| |||||||| || ||| | || | |||||| ||||| || Sbjct 8323 CAGAGTTCTTCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGCTGATCTGGTGG 8264 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 8263 GATACCCTCCTTATC 8249 >seq184254 Length=183585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||| ||||| || || Sbjct 180710 TCCTCCCCTGAGCCTCAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTGTAATCAGC 180651 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 180650 CAGGGTCCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 180591 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 180590 TATGCCTTCTTTATC 180576 >seq182928 Length=15200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || ||||||||||| || | ||| ||| |||| Sbjct 4591 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACTATCT 4532 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| ||| | || | ||||||||||| || | || |||||||| Sbjct 4531 TCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCC 4472 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||| |||| || || | Sbjct 4471 TGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCGACCTCAAGCGTAATAGTC 4412 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| ||||| ||||| |||||||| Sbjct 4411 TTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 4380 >seq198291 Length=74715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||||||||||||||| || || ||||| || || Sbjct 28679 TCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGC 28620 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| || ||||||||| ||||| || ||| | || | || || ||||| Sbjct 28619 CAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATC 28566 >seq146937 Length=209544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || || || ||||| ||||| || || Sbjct 83623 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGC 83564 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||| || || ||| | || | ||||| || || || Sbjct 83563 TAAGGTCCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 83504 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| |||| ||| || | ||| |||||| | ||| Sbjct 83503 GATTCCCTCCTTATCCTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTTTCGAC 83444 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || || || ||||| || ||||| ||||| Sbjct 83443 TTCAAGGGTGATTGTTTTCCCAGTTAAGGTTTTGACGAAAATCTGCAT 83396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378170072336910