Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq188529 89.7 4e-13 seq146937 86.0 5e-12 >seq188529 Length=122975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||||||||| || || | || || ||||| || || |||| || || ||| Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGA---GAGT 109084 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | || |||| |||||| | || ||||| | || |||| Sbjct 109085 TCAGACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGAC 109144 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| || || |||| ||| || || ||||| |||||| | ||| | ||||| Sbjct 109145 CAGCAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTAT 109204 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||||||||| ||| | || |||||| | ||||| || ||| | |||||| Sbjct 109205 AACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGT 109255 >seq146937 Length=209544 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||| || ||||| || ||| | || |||||| | Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | |||||||| ||||| | || || || | || |||||| Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | || || | ||| || || ||| |||||||| | ||| | ||||||| Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 83575 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 || ||||| ||| | || ||||| || ||| Sbjct 83576 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 83605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417009505722560