Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq118536 183 4e-41 seq44392 86.0 8e-12 >seq118536 Length=58152 Score = 183 bits (202), Expect = 4e-41 Identities = 563/869 (65%), Gaps = 4/869 (0%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || | || || || |||||||| || |||| || || Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||||||| | || | | | ||||| || | | Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | || || || || | ||| || ||| || || |||| || | ||| Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487 Query 33531 AATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 |||| ||| ||| | | | | | | || | |||| |||||| |||| Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAG--CAAACAAGCGA 25429 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 |||| ||||||| ||| ||||| || |||||| ||||| || || || | ||| |||| Sbjct 25428 AATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCA 25369 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || |||||||| | ||| ||||| | | ||| ||| || || || || |||| Sbjct 25368 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTT 25309 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33768 | || ||||||||||| | | ||| || | || ||| ||||| | Sbjct 25308 CCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATCGATCCAACGTA 25249 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 | ||||| | |||||||| | ||||| || || || || | || || | | Sbjct 25248 GGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGC 25189 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 ||||||| | | || || | || | || | | ||||| ||||| || || || | Sbjct 25188 TTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGA 25129 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 |||||||||| || || || || ||||||||| | ||||||| || || |||||| Sbjct 25128 TGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTCTT 25069 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | || | | | |||| ||||| || || || || ||| || ||||| || | Sbjct 25068 TCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAA 25009 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 || || | || |||| |||| | || ||||| | | ||| | | | |||| Sbjct 25008 GGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATCGG 24949 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 ||||| ||| |||||||| | ||||| || || || || ||||| ||||| | || Sbjct 24948 AAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCC 24889 Query 34129 AGATGTCATGATATTGGATTGGGAAAATA 34157 | || | | ||||| |||||||| ||| Sbjct 24888 AAATTTGTGGGTATTGAATTGGGAACATA 24860 >seq44392 Length=18013 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||||||||| || ||||| || || || |||||| || ||| | | || Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780 ||||| | || || || || ||||| | ||| || || || || | || | ||| | Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||| || || ||||| |||| ||| | || || || | ||| || | || | Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483 Query 63841 AAGTTTTAAAACCAAAATA 63859 | ||||| ||||||||||| Sbjct 9484 AGGTTTTGAAACCAAAATA 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627818574683040