Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq44392 120 3e-22 seq178632 116 3e-21 seq175890 98.7 9e-16 seq118536 93.3 4e-14 >seq44392 Length=18013 Score = 120 bits (132), Expect = 3e-22 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 38395 GACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||||| |||||| ||||||||| || ||||||||||| ||||||||||| |||||| Sbjct 9286 GACATACTTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACC 9345 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 || || |||| ||| ||| |||| || || || |||||| | ||| || | Sbjct 9346 ATCGTTGAGACATCAAATGATACGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCC 9405 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTT 38569 | | |||||| ||||| ||||| || ||||| ||||||| | |||| | | || || Sbjct 9406 CAACAGATACTCTCATCAGCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATC--TT 9463 Query 38570 TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTAT 38629 |||| || || || | || || ||||| | ||||||||| ||| | ||||||| | Sbjct 9464 TAAG-AGGTAAGACCTCTCAAAGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGT 9522 Query 38630 CGTAT 38634 | ||| Sbjct 9523 CATAT 9527 >seq178632 Length=191222 Score = 116 bits (128), Expect = 3e-21 Identities = 182/255 (71%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 38385 AAAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 |||| |||| ||| | |||||| ||||||||| || ||||||||||| ||||||||| Sbjct 179122 AAAAAAACT-GACGTACTTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCA 179064 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 || |||||||| || |||| ||| |||||||| || || || |||||| | Sbjct 179063 TGAGTGAACCATCGTTGAGACATCAAATGATATGTTTTGATGGCAGATTCAATATCATCC 179004 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA--- 38559 ||| || || | |||||| ||||| ||||| |||||||| ||||||| | |||| Sbjct 179003 TTGTGTATCCCAACAGATACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCC 178944 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAA 38619 | || |||||| || || || | || | ||||| | ||||| ||| ||| | Sbjct 178943 CGAATC--TTTAAG-AGGTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCA 178887 Query 38620 TAATCTCTATCGTAT 38634 ||||||| || ||| Sbjct 178886 AAATCTCTGTCATAT 178872 >seq175890 Length=85540 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38386 AAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| | ||||| ||||||| ||||||||| || ||||| | || ||||| |||| Sbjct 20410 AATCAAATTGACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCAT 20469 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | |||||||| ||| |||| ||| ||| || | || || || |||||| | Sbjct 20470 GAGTGAACCATCTTTGAGACATCAAATGATAAGTCTTGATGGCAGATTCAATATCATCCT 20529 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || || | ||| || ||||| |||||||||||||| ||||||| Sbjct 20530 TGTGGATTCCAACAGAAACTCTCATCAGCATATGTTGTGGCCTTTCTA 20577 >seq118536 Length=58152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| || |||||||| || ||||||||||| || |||| || || || || ||| Sbjct 25438 AAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 25379 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| || ||||| || Sbjct 25378 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 25319 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| ||||| || || Sbjct 25318 AAAATACCTTCCACACAAGCAAAGGCAAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467037713997920