Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq175354 95.1 1e-14 seq196472 93.3 4e-14 seq224189 91.5 1e-13 seq146937 89.7 5e-13 seq242921 87.8 2e-12 seq182928 87.8 2e-12 seq140002 87.8 2e-12 seq184254 82.4 8e-11 seq28647 82.4 8e-11 >seq175354 Length=42077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||| ||||| || ||| ||| ||| || || || || ||| Sbjct 17507 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 17566 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | | ||| || ||||| || ||||| ||||| |||| ||| ||| Sbjct 17567 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTA 17626 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | || || |||| ||| | ||||||||||| | ||| Sbjct 17627 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 17687 TTGACAAAGATCTGCAT 17703 >seq196472 Length=12654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | || ||||| ||||||||||| ||||| Sbjct 7698 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 7639 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || ||||| ||||| || ||| |||||| |||||| ||||| || || Sbjct 7638 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 7580 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | || | ||||| | ||| || Sbjct 7579 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 7520 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || ||||| || || ||||| Sbjct 7519 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 7472 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| ||| | ||| ||||| |||||||| |||||||| || |||| | ||||| Sbjct 7908 ACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCC 7849 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || |||||| | ||||| | ||| || || || || || ||||| || || || Sbjct 7848 AATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCT-TG 7790 Query 139676 ATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | |||| | | || | ||||| ||| ||| || || | || | || || Sbjct 7789 AATTTTCGCTTTAACGTTATCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTT 7730 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || || || ||||||||||| Sbjct 7729 TCCAGTCAATGTCTTAACAAATATTTGCAT 7700 >seq224189 Length=50442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAG--TCTTCGAGCTGTTTA 139624 || ||||| || || ||||| ||||| ||| | | |||| || ||||||||||| Sbjct 16431 GTGGACTCCTTCTGGATGTTGTAATCAGCTA---GAGTTCGACCATCCTCGAGCTGTTTT 16487 Query 139625 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT 139684 || || | || || || ||||| || || || |||||||| ||||| ||| ||| Sbjct 16488 CCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTTGCC 16547 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | || | |||||||| || || ||||||| ||| | ||||| || |||| Sbjct 16548 TTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAGG 16607 Query 139745 GTTTTTACGAATATTTGCAT 139764 ||||| ||||| || ||||| Sbjct 16608 GTTTTCACGAAGATCTGCAT 16627 >seq146937 Length=209544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||||| || || || || || ||||| || ||| Sbjct 83166 CCGCCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCT 83107 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||||||||| || || || |||||| | ||||| || || || Sbjct 83106 AGGGTTCTACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 83047 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | || | ||||||| | || || Sbjct 83046 ATTCCTTCTTTGTC-CTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 82988 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || ||||| | ||||| ||||| || ||||| Sbjct 82987 CTCAAGGGTGATTGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 82940 >seq242921 Length=127737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| ||||| ||||| || ||| Sbjct 49106 GCCACCGCGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 49047 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || |||||| |||||| | |||||||||||||| Sbjct 49046 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 48987 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 48986 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 48927 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||| | ||| ||||| || |||||||| Sbjct 48926 CTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTTTACAAAGATTTGCAT 48879 >seq182928 Length=15200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | | | | ||| | ||| | || |||||||| |||||||| ||||| | Sbjct 4834 GCCACCTCTAAGATGAAGAACAAGGTGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGT 4775 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || | | ||| ||| || || || || |||||| ||||||| | ||||| || ||||| Sbjct 4774 CAAT-TCCTCCCGTCCTCAAGTTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGAGG 4716 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| ||| | | || | || || || || Sbjct 4715 AATACCTTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTTAACTTTCAAC 4656 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||| || || || || ||||| Sbjct 4655 TTCAAGGGTGATTGTCTTGCCGGTAAGCGTCTTGACAAAGATCTGCAT 4608 >seq140002 Length=100703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || || || |||||| |||||| | |||||||| ||||| ||||||||||| Sbjct 55715 TCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 55656 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||| || | ||| ||||||| ||| | Sbjct 55655 TCCTGGATTTTAGCTTTGACATTGTCAATTGTATCAGAACTCTCAACCTCAAGGGTAATA 55596 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| |||||||| || || |||||| Sbjct 55595 GTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 55560 >seq184254 Length=183585 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| ||||| || ||||| || || | || Sbjct 180695 CAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTGTAATCAGCCAGGGTCCGACCATC 180636 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 180635 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 180576 >seq28647 Length=54725 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 139541 CCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATT 139600 || || | |||||| || | || | || || || || |||||||||||||| || Sbjct 9678 CCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATC-AGCA-A 9621 Query 139601 GTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTA 139658 ||| |||| |||||||| ||||| |||||||| || | | ||| || || ||||| | Sbjct 9620 GTGTTCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGGAA 9561 Query 139659 TGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACC 139717 | ||||| ||||| ||| | ||||||||| | | || | ||||| | | ||| || Sbjct 9560 TTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAACT 9502 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATT 139759 || | || | ||||| || || | || || ||||| ||| Sbjct 9501 TCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 9460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494489505265600