Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 181 2e-40
seq44392 91.5 2e-13
>seq118536
Length=58152
Score = 181 bits (200), Expect = 2e-40
Identities = 566/871 (65%), Gaps = 8/871 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| || || || || || | || || || |||||||| || |||| || ||
Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||||||||| | |||| || | || | | | ||||| || | |
Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|||||||| || || ||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| || || || || | ||| || ||| || || ||||||| | |||
Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487
Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 49965
|||| ||| ||| | | | | | || ||| || | | |||||| |||
Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 25430
Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025
||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| |||
Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370
Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084
|||| || |||||||| | ||| ||||| | | || | | ||||| || || || ||
Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATACC 25311
Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144
||| || ||||||||||| | | ||| || | | || ||| |||||
Sbjct 25310 TTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATCGATCCAACG 25251
Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 25250 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 25191
Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264
| ||||||| | | || || | || | || | | ||||| ||||| || || ||
Sbjct 25190 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 25131
Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324
||||||||||| || || || || ||||||||| | ||||||| || || |||||
Sbjct 25130 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTC 25071
Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
| | || | | | |||| ||||| || || ||||| ||| || ||||| ||
Sbjct 25070 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGC 25011
Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444
| || || | || ||||| |||| ||| ||||| | | ||| | | | ||||
Sbjct 25010 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATC 24951
Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504
||||| ||| |||||||| | ||||| || || || || ||||| ||||| |
Sbjct 24950 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 24891
Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535
||| || | | ||||| |||||||| |||
Sbjct 24890 CCAAATTTGTGGGTATTGAATTGGGAACATA 24860
>seq44392
Length=18013
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
|||||| ||||||||||| || ||||| || || || |||||| || ||||| | ||
Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364
Query 80394 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTA 80452
||||| | || || ||||| ||||| | ||| || || || || | || | ||| |
Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423
Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512
|||||| || || ||||| || | || | || || || | |||||| | || |
Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483
Query 80513 AAGTTTTAAAACCAAAATA 80531
| ||||| |||||||||||
Sbjct 9484 AGGTTTTGAAACCAAAATA 9502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715989032785520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |