Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq182928 89.7 4e-13
seq175354 82.4 6e-11
>seq182928
Length=15200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014
|| || | ||| ||||| ||||||||||| | |||||||| | || | ||| || ||
Sbjct 4534 TCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTA 4475
Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTAT 43073
|| |||| | ||||| || ||| ||||| ||| |||||| || | ||| ||
Sbjct 4474 TCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGACCTCAAGCGTAAT 4416
Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| |||||||| |||||||| ||||| ||||||||
Sbjct 4415 AGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 4380
>seq175354
Length=42077
Score = 82.4 bits (90), Expect = 6e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011
|| || || | ||| ||||| ||||||||||| | |||||||| | || | ||| |||
Sbjct 17774 TCATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCT 17833
Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071
|| || |||| | ||||| || ||| ||||| |||||| | | |||
Sbjct 17834 TTATCCTGGATCTTTACCTTGACATTGTCAATGGTGTCTGAGTTCTCGACCTTAAGCGTA 17893
Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| |||||||| |||||||| ||||| ||||||||
Sbjct 17894 CTAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 17931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380189403863244
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |