Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 187 3e-42
seq175890 86.0 8e-12
seq44392 86.0 8e-12
>seq118536
Length=58152
Score = 187 bits (206), Expect = 3e-42
Identities = 570/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|| || || || || || | || || || ||||||||||| |||| || ||
Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
||||| ||||||||||||| | |||| || | || | | | ||||| || | |
Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
|||||||| || | |||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
| || || || || | ||| || ||| || || || |||| | |||
Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487
Query 42014 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 42070
| ||| ||| ||| | | | | | || ||| || | | |||||| |||
Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 25430
Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130
||||| ||||||| ||| || || || |||||| ||||| || || || | ||| |||
Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370
Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189
|||| || |||||||| | ||| ||||||| | || | | | ||||| || || || ||
Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATACC 25311
Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 42246
||| || |||||||||| | | ||| || | ||| || ||| |||||
Sbjct 25310 TTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC---CATCGATCCA 25254
Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 25253 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 25194
Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 25193 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 25134
Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426
|| ||||||||||| || || || || ||||||||| | ||||||| ||| || ||
Sbjct 25133 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGAC 25074
Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486
|||| | || | | | |||| ||||| || || ||||| ||| || |||||
Sbjct 25073 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAA 25014
Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546
|| | || || | || |||| |||| | || |||| | | ||| | | | |
Sbjct 25013 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGT 24954
Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606
||| ||||| ||| |||||||| | ||||| || || ||| || ||||| |||||
Sbjct 24953 ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 24894
Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATA 42640
| ||| || | | |||||||||||||| |||
Sbjct 24893 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 24860
>seq175890
Length=85540
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| || || | |||| ||| |||| |||| | || | | ||| |||| ||| |||
Sbjct 20121 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAACAATTCCA 20180
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
|| |||| ||||| || || ||||| || ||| | ||||||||||| || |||
Sbjct 20181 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 20240
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| || ||||| || || ||| || | || ||| || | || ||||| |||
Sbjct 20241 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 20300
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
||||| |||||||| || ||||| | || || ||||||
Sbjct 20301 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 20342
>seq44392
Length=18013
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|||||| ||||||||||| || ||||| || || || |||||| || ||||| | ||
Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364
Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535
||||| | || || ||||| ||||| | ||| ||||| || || | || | ||| |
Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
||| || || || ||||| || | || | || || || | ||| || | || |
Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483
Query 72596 AAGTTTTAAAACCAAAATA 72614
| ||||| |||||||||||
Sbjct 9484 AGGTTTTGAAACCAAAATA 9502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669009020957680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |