Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq118536 187 3e-42 seq175890 86.0 8e-12 seq44392 86.0 8e-12 >seq118536 Length=58152 Score = 187 bits (206), Expect = 3e-42 Identities = 570/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || | || || || ||||||||||| |||| || || Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||||||| || | |||||| || ||| | |||||| || | ||||||||| | || Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487 Query 42014 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 42070 | ||| ||| ||| | | | | | || ||| || | | |||||| ||| Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 25430 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| ||||||| ||| || || || |||||| ||||| || || || | ||| ||| Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 |||| || |||||||| | ||| ||||||| | || | | | ||||| || || || || Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATACC 25311 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 42246 ||| || |||||||||| | | ||| || | ||| || ||| ||||| Sbjct 25310 TTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC---CATCGATCCA 25254 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 25253 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 25194 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 25193 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 25134 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 || ||||||||||| || || || || ||||||||| | ||||||| ||| || || Sbjct 25133 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGAC 25074 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 |||| | || | | | |||| ||||| || || ||||| ||| || ||||| Sbjct 25073 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAA 25014 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || | || || | || |||| |||| | || |||| | | ||| | | | | Sbjct 25013 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGT 24954 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| ||||| ||| |||||||| | ||||| || || ||| || ||||| ||||| Sbjct 24953 ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 24894 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | ||| || | | |||||||||||||| ||| Sbjct 24893 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 24860 >seq175890 Length=85540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||| ||| |||| |||| | || | | ||| |||| ||| ||| Sbjct 20121 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAACAATTCCA 20180 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || ||| | ||||||||||| || ||| Sbjct 20181 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 20240 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| || | || ||| || | || ||||| ||| Sbjct 20241 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 20300 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||| || ||||| | || || |||||| Sbjct 20301 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 20342 >seq44392 Length=18013 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||||||| || ||||| || || || |||||| || ||||| | || Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||||| | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || || || ||||| || | || | || || || | ||| || | || | Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483 Query 72596 AAGTTTTAAAACCAAAATA 72614 | ||||| ||||||||||| Sbjct 9484 AGGTTTTGAAACCAAAATA 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669009020957680