Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq179153 95.1 1e-14 seq196472 93.3 4e-14 seq140002 91.5 1e-13 seq175354 89.7 5e-13 seq28647 89.7 5e-13 seq175890 84.2 2e-11 seq182928 82.4 8e-11 >seq179153 Length=7583 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | ||| | || ||||| || || || |||||||| Sbjct 4528 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4587 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | ||| |||| || ||||||||||| |||||| | || | | ||| ||||| |||| Sbjct 4588 AGTGT--TCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 4645 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC--TGTTCCACCGTGTCCGTGGGTTC 143133 | || ||||| ||||| | | ||||||||||| | | || | ||||||| | || Sbjct 4646 GAATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTC 4704 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | ||||| || || | ||| || || || |||||||| Sbjct 4705 AACCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4755 >seq196472 Length=12654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| | || | || || || ||||| ||||||||||| Sbjct 7698 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 7639 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 7638 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 7580 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | || | |||||| | || || Sbjct 7579 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 7520 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | |||||||| || | || ||||| || || ||||| Sbjct 7519 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 7472 >seq140002 Length=100703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028 |||| || ||||| | || ||||| || || ||||||||||| ||| | ||| || Sbjct 56003 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AGTGTCCTTCC 55945 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 55944 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 55885 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||||| || | | || | ||||||| | || ||||||| ||| | Sbjct 55884 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 55825 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || |||||||| ||||| || || ||||||||| Sbjct 55824 AGTTTTCCCGGTCAAGGTTTTCACAAAGATTTGCATA 55788 >seq175354 Length=42077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || ||||||||||| || ||| ||| ||| || ||||| || ||| Sbjct 17507 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 17566 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | | ||| || ||||| || ||||| ||||| | || ||| ||| Sbjct 17567 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTA 17626 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | ||| ||||||| || | ||||||||||| | || Sbjct 17627 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 17687 TTGACAAAGATCTGCAT 17703 >seq28647 Length=54725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018 |||| || | |||||| || | ||| | ||| ||||| || || ||||| ||||| | Sbjct 9680 CTCCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAA 9621 Query 143019 TTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 ||| |||| |||||||||||||| |||||||| || | | ||| || || ||||| Sbjct 9620 GTGT--TCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGG 9563 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135 || ||||| ||||| | | | ||||||||| | | || | ||||| | | || | Sbjct 9562 AATTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAA 9504 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 143179 |||| | || | ||||| || || | || || ||||| ||| Sbjct 9503 CTTCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 9460 >seq175890 Length=85540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| || || | ||| || | |||| || || || ||||| || | |||||| || Sbjct 18768 AATGTGTCTGCAAGACCCTGGACCCCAAGTCCAATAGGTCGATGTCGTAAATTAGACCTT 18827 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 ||||||||||||| ||||||| | ||| ||||||||||||||||| Sbjct 18828 TTTGCAGTTTCAACAGGGTAGTAGTTGACATCAATAATTTTATTCA 18873 >seq182928 Length=15200 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || ||||||||||| ||| | | ||| ||| || ||||| || ||| Sbjct 4803 GTTGACTCTTTCTGAATGTTGTAATCTGTCAAT-TCCTCCCGTCCTCAAGTTGCTTCCCA 4745 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || ||||| || ||||| ||||| || ||| ||| Sbjct 4744 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTA 4685 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || ||| ||||||| || | ||||||||||| | || Sbjct 4684 ACATTGTCGATGGTATCTTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 4625 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 4624 TTGACAAAGATCTGCAT 4608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505405148969760