Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq179153 95.1 1e-14
seq196472 93.3 4e-14
seq140002 91.5 1e-13
seq175354 89.7 5e-13
seq28647 89.7 5e-13
seq175890 84.2 2e-11
seq182928 82.4 8e-11
>seq179153
Length=7583
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 7/231 (3%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | |||||| || | ||| | || ||||| || || || ||||||||
Sbjct 4528 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4587
Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| ||| |||| || ||||||||||| |||||| | || | | ||| ||||| ||||
Sbjct 4588 AGTGT--TCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 4645
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC--TGTTCCACCGTGTCCGTGGGTTC 143133
| || ||||| ||||| | | ||||||||||| | | || | ||||||| | ||
Sbjct 4646 GAATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTC 4704
Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || | || | ||||| || || | ||| || || || ||||||||
Sbjct 4705 AACCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4755
>seq196472
Length=12654
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | ||| | || | || || || ||||| |||||||||||
Sbjct 7698 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 7639
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | || ||||||||||| || ||| |||||| |||||| ||||| || ||
Sbjct 7638 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 7580
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| ||||| ||| | | || | |||||| | || ||
Sbjct 7579 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 7520
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | |||||||| || | || ||||| || || |||||
Sbjct 7519 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 7472
>seq140002
Length=100703
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028
|||| || ||||| | || ||||| || || ||||||||||| ||| | ||| ||
Sbjct 56003 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AGTGTCCTTCC 55945
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
|| || || || || |||||| | || || | ||||| || || || || ||||| ||
Sbjct 55944 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 55885
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
|| ||||||| || | | || | ||||||| | || ||||||| ||| |
Sbjct 55884 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 55825
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| || |||||||| ||||| || || |||||||||
Sbjct 55824 AGTTTTCCCGGTCAAGGTTTTCACAAAGATTTGCATA 55788
>seq175354
Length=42077
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || ||||| || ||||||||||| || ||| ||| ||| || ||||| || |||
Sbjct 17507 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 17566
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| | | ||| || ||||| || ||||| ||||| | || ||| |||
Sbjct 17567 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTA 17626
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | || || | ||| ||||||| || | ||||||||||| | ||
Sbjct 17627 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686
Query 143168 TTTACGAATATTTGCAT 143184
|| || || || |||||
Sbjct 17687 TTGACAAAGATCTGCAT 17703
>seq28647
Length=54725
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018
|||| || | |||||| || | ||| | ||| ||||| || || ||||| ||||| |
Sbjct 9680 CTCCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAA 9621
Query 143019 TTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
||| |||| |||||||||||||| |||||||| || | | ||| || || |||||
Sbjct 9620 GTGT--TCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGG 9563
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135
|| ||||| ||||| | | | ||||||||| | | || | ||||| | | || |
Sbjct 9562 AATTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAA 9504
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 143179
|||| | || | ||||| || || | || || ||||| |||
Sbjct 9503 CTTCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 9460
>seq175890
Length=85540
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931
|||| || || | ||| || | |||| || || || ||||| || | |||||| ||
Sbjct 18768 AATGTGTCTGCAAGACCCTGGACCCCAAGTCCAATAGGTCGATGTCGTAAATTAGACCTT 18827
Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977
||||||||||||| ||||||| | ||| |||||||||||||||||
Sbjct 18828 TTTGCAGTTTCAACAGGGTAGTAGTTGACATCAATAATTTTATTCA 18873
>seq182928
Length=15200
Score = 82.4 bits (90), Expect = 8e-11
Identities = 137/197 (70%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || ||||| || ||||||||||| ||| | | ||| ||| || ||||| || |||
Sbjct 4803 GTTGACTCTTTCTGAATGTTGTAATCTGTCAAT-TCCTCCCGTCCTCAAGTTGCTTCCCA 4745
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| | ||||| || ||||| || ||||| ||||| || ||| |||
Sbjct 4744 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTA 4685
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | || || ||| ||||||| || | ||||||||||| | ||
Sbjct 4684 ACATTGTCGATGGTATCTTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 4625
Query 143168 TTTACGAATATTTGCAT 143184
|| || || || |||||
Sbjct 4624 TTGACAAAGATCTGCAT 4608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505405148969760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |