Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq146937 107 2e-18 seq188529 95.1 1e-14 >seq146937 Length=209544 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || || || |||||||||| ||| | | || |||| ||| Sbjct 84055 GTGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCCAGAGTTCTTCCATCTTCCAACTG 83996 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 83995 CTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 83936 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | ||||||| | |||| || | || |||||||| ||||| Sbjct 83935 AGCCTTCACATTGTCAATAGTATCGGAACTCTCCACCTCCAAAGTGATGGTTTTCCCTGT 83876 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 83875 CAACGTCTTCACAAAAATCTGCAT 83852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || || |||||||| || | ||| | | || || Sbjct 83833 CACAAGGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCCATCTTC 83774 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| ||||| ||| | || || || |||||||| || | ||||| || || Sbjct 83773 CAACTGCTTACCAGCAAAGATCAGCCTTTGCTGATCTGGTGGGATACCCTCCTTATCCTG 83714 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCT--CCGTTTCGACGGTAATGGT 19008 || ||| || || | | ||| ||| || || ||| || || | || ||||| Sbjct 83713 GATCTTCGCCTTAACGTTGTCGATAGTGTC---AGAGCTTTCCACCTCAAGAGTGATGGT 83657 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || || ||||| ||||||||||| |||||| Sbjct 83656 TTTCCCGGTCAAAGTCTTGACAAAAATCTGCATT 83623 >seq188529 Length=122975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 109465 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 109406 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 109405 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 109346 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 109345 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 109286 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||||||||||| ||||| Sbjct 109285 TCCTGTCAAAGTTTTGACAAAAATCTGCAT 109256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413289852389692