Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq196472 122 6e-23 seq188529 104 2e-17 seq72314 95.1 9e-15 seq140002 87.8 1e-12 seq242921 82.4 5e-11 >seq196472 Length=12654 Score = 122 bits (134), Expect = 6e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTG 43977 || ||||| ||| ||||||||||||||||| | | || ||| |||| |||||||| Sbjct 7902 TGGAGCGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTG-CGCCCATCTTCCAATTG 7844 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || || ||||| |||| || ||| |||||| | || | |||||| |||||| |||||| Sbjct 7843 CTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTT 7784 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || || ||| ||| || | ||| || || | || |||||||| || || Sbjct 7783 CGCTTTAACGTTATCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGT 7724 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| Sbjct 7723 CAATGTCTTAACAAATATTTGCAT 7700 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || |||||||| |||||||| ||||| | |||||| || | || | ||| || | Sbjct 8312 CATCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGCTGATCTGGTGGGATACCCTCCT 8253 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| || || || || || ||| ||||| | |||||| || | ||| | Sbjct 8252 TATCCTGTATCTTGGCCTTCACATTATCAATGGTATCGGAACTCTCCACCTCCAACGTGA 8193 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || || || |||||||||||||| || |||||| Sbjct 8192 TCGTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCATG 8155 >seq188529 Length=122975 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | ||||||| ||| || || ||| || || || |||||||| Sbjct 109255 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGC 109196 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || ||| || | ||| || |||||||||||||| || |||||||| | | Sbjct 109195 -AAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGG 109137 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| |||||| || || || ||| || |||| ||| | Sbjct 109136 GAATTCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCAA 109077 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 109076 CCTCGAGAGTAATGGTTTTTCCAGTGAGTGTCTTTACAAATATCTGCAT 109028 >seq72314 Length=63918 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| |||||||| |||| || ||||| ||| | || | ||||| | Sbjct 55614 CATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCT 55555 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| || || | ||| || || | ||| || || | ||| | Sbjct 55554 TATCTTGAATTTTGGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAACGTGA 55495 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || ||||| ||||| ||||| |||||||| Sbjct 55494 TTGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCAT 55458 >seq140002 Length=100703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| || | ||||| ||| || ||| || || |||||||| || || Sbjct 55788 ACCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 55729 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||| ||||| ||||| ||||||| ||||| || |||| Sbjct 55728 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 55669 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| |||||| | ||| ||||| | ||| || Sbjct 55668 AATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCAGAACTCTCAAC 55609 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || ||||| || ||||| || ||||| Sbjct 55608 CTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 55561 >seq242921 Length=127737 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | | ||||||||| || ||| ||| || || ||||||||||| Sbjct 50017 CCTCCCCTCAGACGGAGCACCAAATGCAGTGTGGACTCCTTCTGGATATTATAATCAGCA 49958 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| ||||| || ||||| ||| | || Sbjct 49957 AGGGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCCGGTGGA 49898 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| || || || || || ||| ||||| | || || Sbjct 49897 ATCCCTTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCGACC 49838 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || ||||| || || || || ||||||||||| || |||||| Sbjct 49837 TCCAAGGTGATTGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCATG 49790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353679696147864