Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq198291 93.3 4e-14 seq72314 84.2 2e-11 seq188529 82.4 6e-11 seq140002 82.4 6e-11 >seq198291 Length=74715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | ||| || |||| || ||||| |||||||| || || Sbjct 28690 TTAATCATAGTTCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 28631 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| | |||||| Sbjct 28630 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGC 28571 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 28570 TGATCAGGAGGTATCCCTTCTTTGTC 28545 >seq72314 Length=63918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| || || ||||| ||||| || || | | ||| | ||||||||||||| Sbjct 55660 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGT 55601 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| |||||||| ||||| || | |||||| || || |||||| Sbjct 55600 TTCCCTGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTG 55541 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | ||| | || | || | || ||||| || || ||||| || || Sbjct 55540 GCCTTAACATTGTCAATCGTGTC-CGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGT 55482 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| ||||||||| Sbjct 55481 TAAGGTCTTAACAAAGATTTGCATT 55457 >seq188529 Length=122975 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| ||||| || |||||||| | | || ||| |||| || Sbjct 109458 TGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 109399 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || |||||||| ||||| || | |||||||| || |||||| Sbjct 109398 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 109339 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||||| | | ||| || || || | ||| ||||| || ||||| || || || Sbjct 109338 GCCTTCACGTTGTCAATAGTGTCAG-AGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGT 109280 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||||||||| ||||| Sbjct 109279 CAAAGTTTTGACAAAAATCTGCAT 109256 >seq140002 Length=100703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||||||| || || ||||| || || ||||||||||| | | || | ||| Sbjct 56001 CAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCTAGTGTCCTTCCATC 55942 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | || || || ||| ||||||||||||| || || || | ||||| || || Sbjct 55941 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTTATC 55882 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||||| || || | | | | | || | || | || ||| | ||||| | Sbjct 55881 TTGAATTTTTGCCTTAACATTGTCGATGGTGTC-CGAGCTCTCAACTTCAAGAGTAATAG 55823 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||| ||||| ||||| |||||||| Sbjct 55822 TTTTCCCGGTCAAGGTTTTCACAAAGATTTGCAT 55789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418288734698958