Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq118536 116 3e-21 >seq118536 Length=58152 Score = 116 bits (128), Expect = 3e-21 Identities = 480/749 (64%), Gaps = 15/749 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| || ||||| || | |||||| || ||||| || || || || ||| Sbjct 25741 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 25682 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTA 12961 | ||| ||| ||||| |||| || ||||| | || || | ||| || | | Sbjct 25681 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCT--GAGCATT-GTACAGCTTATCA 25625 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||| ||||| || || || ||||| | |||| ||||| Sbjct 25624 TAACCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCT 25565 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||||| || || | ||| | ||||||| || Sbjct 25564 CCATTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCC 25505 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGC 13138 || || || ||| || || |||| ||||| || | | | | || | || Sbjct 25504 ACAGCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAA 25448 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || | | || ||| || |||||||||||||| ||||| || || |||| |||||| Sbjct 25447 CTATAAAGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTC 25388 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| || ||||| | ||| || ||||| | ||| ||||||||| || Sbjct 25387 GAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTT 25328 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || || ||||| || ||||| || ||||| || | ||| | || || | | | Sbjct 25327 CCAGAGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATG---TT 25271 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | || || ||||| | |||||| || || || | | ||| ||| ||| | Sbjct 25270 TCGGAACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 25211 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || | |||| ||||| ||||||| | | ||| || || | |||| | Sbjct 25210 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 25151 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | || ||||| || || || || ||||| ||||| |||||||| || || ||| | Sbjct 25150 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGC 25091 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 ||||| | || || ||||| || ||| | |||| |||||| ||| || ||| Sbjct 25090 GCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 25031 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 || || || ||||| ||||| | ||| Sbjct 25030 TCTGAGGCGGCGAAAAAGGCAAGGACGTG 25002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429648670821036