Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq232054 100 2e-16 seq224189 95.1 1e-14 seq222647 95.1 1e-14 seq140002 93.3 4e-14 seq242921 91.5 1e-13 seq192764 89.7 4e-13 seq24881 87.8 2e-12 seq146937 82.4 6e-11 >seq232054 Length=109336 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 62201 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 62142 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || |||||||| ||| || | | |||||||||| ||| || Sbjct 62141 CTTACCTGCGAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 62082 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | ||||| ||| | || || || ||||| || Sbjct 62081 AGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTACCCGT 62022 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 62021 CAGGGTCTTCACGAATATCTGCATC 61997 >seq224189 Length=50442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||||||||| | ||| | ||||| Sbjct 16418 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 16477 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 16478 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 16537 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 16538 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 16595 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 16596 TTACCCGTCAGGGTTTTCACGAAGATCTGCATC 16628 >seq222647 Length=37102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || | ||||||||| || | ||| ||||| || Sbjct 27473 CACGAGATGAAGAGTCGACTCCTTCTGGAGGTTGTAATCGGCTAGGGTTCGGTCGTCTTC 27532 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 27533 CAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 27592 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 27593 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 27649 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 27650 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 27683 >seq140002 Length=100703 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| |||||| ||| || || ||||||||||||| | Sbjct 56243 CCTCCTCTCAAGCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAG-C 56185 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | | | ||||| |||||||| || | ||||||| | |||||| || || Sbjct 56184 AAGAGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCAGGTGG 56125 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || |||||| ||||| | | ||||| || | | ||| Sbjct 56124 GATCCCTTCCTTATCTTGAATTTTAGCCTTGACATTATCGATGGTGTCAGAACTCTCAAC 56065 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || || || || |||||||| |||||||| Sbjct 56064 CTCAAGGGTGATAGTTTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 56017 >seq242921 Length=127737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | ||| | ||||| |||||| Sbjct 49537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCCTCGAGCTGC 49478 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | |||| || | ||||||||| || | | |||||||||| || || Sbjct 49477 TTACCAGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTT 49418 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| ||| ||| | || ||||| || || || Sbjct 49417 GCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTC 49358 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||||||||||||||| Sbjct 49357 AAAGTTTTCACAAAAATCTGCAT 49335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | | || | ||||| ||| |||||| ||||||||||| ||||| Sbjct 49789 CCACCGCGCAAACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGCA 49730 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | ||||| |||||||| || | | || | | ||||||||| || Sbjct 49729 AGAGTG-CGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 49671 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||||| | | || || |||| | ||| Sbjct 49670 GATTCCTTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 49611 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || ||||| || || |||||||| ||||| Sbjct 49610 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCAT 49563 >seq192764 Length=177479 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| |||| || Sbjct 143327 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 143386 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 143387 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 143446 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 143447 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 143503 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 143504 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 143537 >seq24881 Length=242481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| | |||||||||||||| | ||| | ||||| Sbjct 141193 CACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 141134 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 141133 AAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTTGTCCTG 141074 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | || || |||| || || ||| | || ||||| || Sbjct 141073 GATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTT 141014 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || |||||||| || ||||||||| Sbjct 141013 ACCCGTCAGGGTTTTCACGAAGATCTGCATC 140983 >seq146937 Length=209544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| |||| || | || |||| |||||| || | | Sbjct 84043 CTCCTTCTGGATGTTATAATCCGCCAGAGTTCTTCCATCTTCCAACTGCTTCCCAGCAAA 83984 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | | |||||||||| || | || ||||||||| ||| || ||| | | Sbjct 83983 AATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 83924 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| | |||| ||| | || |||||||| || || | || ||||| Sbjct 83923 GTCAATAGTATCGGAACTCTCCACCTCCAAAGTGATGGTTTTCCCTGTCAACGTCTTCAC 83864 Query 48715 AAAAATCTGCATC 48727 ||||||||||||| Sbjct 83863 AAAAATCTGCATC 83851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419947585241918