Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq189776 122 5e-23 seq206090 118 6e-22 seq214531 116 2e-21 seq207254 114 7e-21 seq185512 113 2e-20 seq183169 113 2e-20 seq172797 113 2e-20 seq4076 113 2e-20 seq2293 113 2e-20 seq189259 111 8e-20 seq106669 111 8e-20 seq221307 109 3e-19 seq190167 109 3e-19 seq58892 109 3e-19 seq180284 107 1e-18 seq238816 105 3e-18 seq224731 105 3e-18 seq15037 105 3e-18 seq134659 104 1e-17 seq87958 96.9 2e-15 seq135203 93.3 2e-14 seq19092 93.3 2e-14 seq32336 91.5 8e-14 >seq189776 Length=340063 Score = 122 bits (134), Expect = 5e-23 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| |||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 158724 TTAAAAAAAAACAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 158665 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 158664 ACGACGCTCTAACCAACTGAGCTAATGGGCC 158634 >seq206090 Length=32302 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3031 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 2972 Query 11513 AACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||| Sbjct 2971 AACTGAGCTAATGGGCCGT 2953 >seq214531 Length=120792 Score = 116 bits (128), Expect = 2e-21 Identities = 92/107 (86%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| ||| || || ||| |||| |||||||||| | | |||||||| |||||||| Sbjct 66863 AAATAT-GAAGGAAAAATAAAACAAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 66921 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct 66922 GCGTTATTAGCATGACGCTCTAACCAACTGAGCTAATGGGCC-TCGA 66967 >seq207254 Length=92905 Score = 114 bits (126), Expect = 7e-21 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 47739 CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 47798 Query 11511 CCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||||| || Sbjct 47799 CCAACTGAGCTAATGGGCCATC 47820 Score = 109 bits (120), Expect = 3e-19 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| | Sbjct 47434 CAAAATGGCCCATGCAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 47493 Query 11511 CCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||||| || Sbjct 47494 CCAACTGAGCTAATGGGCCATC 47515 >seq185512 Length=100650 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 38717 AAAAACGAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 38776 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 38777 GCTCTAACCAACTGAGCTAATGGGCC 38802 >seq183169 Length=51349 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 40410 TGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40351 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 40350 TGAGCTAATGGGCC 40337 >seq172797 Length=107522 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 76148 AAAAAGAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 76089 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 76088 GCTCTAACCAACTGAGCTAATGGGCC 76063 >seq4076 Length=44640 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 31695 AAAATAACCAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 31636 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 31635 GCTCTAACCAACTGAGCTAATGGGCC 31610 >seq2293 Length=47633 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 14312 AAAAGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 14371 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 14372 GCTCTAACCAACTGAGCTAATGGGCC 14397 >seq189259 Length=23165 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9609 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9550 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 9549 CTGAGCTAATGGGCC 9535 >seq106669 Length=31006 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||| || |||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 21543 AATAAGAAGAAAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 21602 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 21603 CGACGCTCTAACCAACTGAGCTAATGGGCC 21632 >seq221307 Length=55142 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 40111 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40052 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 40051 TGAGCTAATGGGCC 40038 >seq190167 Length=162355 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4233 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4174 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 4173 TGAGCTAATGGGCC 4160 >seq58892 Length=173340 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 172165 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 172224 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 172225 TGAGCTAATGGGCC 172238 >seq180284 Length=39006 Score = 107 bits (118), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 7947 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 8006 Query 11513 AACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCTA 11554 |||||||||||| ||||| | | |||| || | ||||||| Sbjct 8007 AACTGAGCTAATAGGCCG-CTGCTATTGCGA--TGTCATCTA 8045 >seq238816 Length=19013 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 5727 ATAAAAACAAGAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 5668 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 5667 GACGCTCTAACCAACTGAGCTAATAGGCC 5639 >seq224731 Length=242214 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | || ||||| ||||||||||||||||||||||||||||| ||| Sbjct 138081 AAATGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 138022 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 138021 AACTGAGCTAATGGGCC 138005 >seq15037 Length=204412 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 54416 AAAATAAA--TGGCCCATGCAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 54359 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 54358 TCTAACCAACTGAGCTAATGGGCC 54335 >seq134659 Length=138560 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | |||||| ||||||||||||||||||||||||||||| |||||| Sbjct 134565 TGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 134624 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 134625 TGAGCTAATGGGCC 134638 >seq87958 Length=99112 Score = 96.9 bits (106), Expect = 2e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 ||| || ||||||||| | | |||| ||| ||||||||| |||||||||| ||||||| Sbjct 87403 AATTAATATGGCCCATGCAGGTCTCGACCCTACGACCTTCGTGTTATTAGCATGACGCTC 87344 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||||||||| Sbjct 87343 TAACCAACTGAGCTAATGGGCC 87322 >seq135203 Length=31280 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| ||||||||||| |||||||| |||||||| || Sbjct 13223 AAAATGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGGTATTAGCAGGACGCTCTAAC 13164 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 13163 CAACTGAGCTAATCGGCC 13146 >seq19092 Length=52359 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | | |||||| |||||||| |||||||||||||||||||| || Sbjct 45298 AATTTGGCCCATGCAGGTCTGGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAAC 45239 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 45238 CAACTGAGCTAACAGGCC 45221 >seq32336 Length=121125 Score = 91.5 bits (100), Expect = 8e-14 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| | | ||||||||||||| |||||||||||||| |||| |||||| Sbjct 115119 TGGCCCATGCAAGTCTTAATCCTTCGACCTTCGTGTTATTAGCACGAC-CTCTAACCAAC 115061 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 115060 TGAGCTAATGGGCC 115047 Lambda K H 0.637 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260681982631768