Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq189776 122 5e-23
seq206090 118 6e-22
seq214531 116 2e-21
seq207254 114 7e-21
seq185512 113 2e-20
seq183169 113 2e-20
seq172797 113 2e-20
seq4076 113 2e-20
seq2293 113 2e-20
seq189259 111 8e-20
seq106669 111 8e-20
seq221307 109 3e-19
seq190167 109 3e-19
seq58892 109 3e-19
seq180284 107 1e-18
seq238816 105 3e-18
seq224731 105 3e-18
seq15037 105 3e-18
seq134659 104 1e-17
seq87958 96.9 2e-15
seq135203 93.3 2e-14
seq19092 93.3 2e-14
seq32336 91.5 8e-14
>seq189776
Length=340063
Score = 122 bits (134), Expect = 5e-23
Identities = 81/91 (89%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| |||||| |||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 158724 TTAAAAAAAAACAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 158665
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 158664 ACGACGCTCTAACCAACTGAGCTAATGGGCC 158634
>seq206090
Length=32302
Score = 118 bits (130), Expect = 6e-22
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3031 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 2972
Query 11513 AACTGAGCTAATGGGCCGT 11531
|||||||||||||||||||
Sbjct 2971 AACTGAGCTAATGGGCCGT 2953
>seq214531
Length=120792
Score = 116 bits (128), Expect = 2e-21
Identities = 92/107 (86%), Gaps = 3/107 (3%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
|||||| ||| || || ||| |||| |||||||||| | | |||||||| ||||||||
Sbjct 66863 AAATAT-GAAGGAAAAATAAAACAAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 66921
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534
|||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 66922 GCGTTATTAGCATGACGCTCTAACCAACTGAGCTAATGGGCC-TCGA 66967
>seq207254
Length=92905
Score = 114 bits (126), Expect = 7e-21
Identities = 74/82 (90%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |
Sbjct 47739 CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 47798
Query 11511 CCAACTGAGCTAATGGGCCGTC 11532
||||||||||||||||||| ||
Sbjct 47799 CCAACTGAGCTAATGGGCCATC 47820
Score = 109 bits (120), Expect = 3e-19
Identities = 73/82 (89%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| |
Sbjct 47434 CAAAATGGCCCATGCAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 47493
Query 11511 CCAACTGAGCTAATGGGCCGTC 11532
||||||||||||||||||| ||
Sbjct 47494 CCAACTGAGCTAATGGGCCATC 47515
>seq185512
Length=100650
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 38717 AAAAACGAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 38776
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 38777 GCTCTAACCAACTGAGCTAATGGGCC 38802
>seq183169
Length=51349
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 40410 TGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40351
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 40350 TGAGCTAATGGGCC 40337
>seq172797
Length=107522
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 76148 AAAAAGAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 76089
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 76088 GCTCTAACCAACTGAGCTAATGGGCC 76063
>seq4076
Length=44640
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | | | |||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 31695 AAAATAACCAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 31636
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 31635 GCTCTAACCAACTGAGCTAATGGGCC 31610
>seq2293
Length=47633
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 14312 AAAAGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 14371
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 14372 GCTCTAACCAACTGAGCTAATGGGCC 14397
>seq189259
Length=23165
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 9609 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9550
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 9549 CTGAGCTAATGGGCC 9535
>seq106669
Length=31006
Score = 111 bits (122), Expect = 8e-20
Identities = 79/90 (88%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||||| || |||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 21543 AATAAGAAGAAAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 21602
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 21603 CGACGCTCTAACCAACTGAGCTAATGGGCC 21632
>seq221307
Length=55142
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 40111 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40052
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 40051 TGAGCTAATGGGCC 40038
>seq190167
Length=162355
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 4233 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4174
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 4173 TGAGCTAATGGGCC 4160
>seq58892
Length=173340
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 172165 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 172224
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 172225 TGAGCTAATGGGCC 172238
>seq180284
Length=39006
Score = 107 bits (118), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 7947 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 8006
Query 11513 AACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCTA 11554
|||||||||||| ||||| | | |||| || | |||||||
Sbjct 8007 AACTGAGCTAATAGGCCG-CTGCTATTGCGA--TGTCATCTA 8045
>seq238816
Length=19013
Score = 105 bits (116), Expect = 3e-18
Identities = 77/89 (87%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 5727 ATAAAAACAAGAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 5668
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 5667 GACGCTCTAACCAACTGAGCTAATAGGCC 5639
>seq224731
Length=242214
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 138081 AAATGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 138022
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||||||||
Sbjct 138021 AACTGAGCTAATGGGCC 138005
>seq15037
Length=204412
Score = 105 bits (116), Expect = 3e-18
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 54416 AAAATAAA--TGGCCCATGCAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 54359
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||||||||
Sbjct 54358 TCTAACCAACTGAGCTAATGGGCC 54335
>seq134659
Length=138560
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | | |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 134565 TGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 134624
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 134625 TGAGCTAATGGGCC 134638
>seq87958
Length=99112
Score = 96.9 bits (106), Expect = 2e-15
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
||| || ||||||||| | | |||| ||| ||||||||| |||||||||| |||||||
Sbjct 87403 AATTAATATGGCCCATGCAGGTCTCGACCCTACGACCTTCGTGTTATTAGCATGACGCTC 87344
Query 11508 TRACCAACTGAGCTAATGGGCC 11529
| ||||||||||||||||||||
Sbjct 87343 TAACCAACTGAGCTAATGGGCC 87322
>seq135203
Length=31280
Score = 93.3 bits (102), Expect = 2e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | | |||||| ||||||||||| |||||||| |||||||| ||
Sbjct 13223 AAAATGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGGTATTAGCAGGACGCTCTAAC 13164
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 13163 CAACTGAGCTAATCGGCC 13146
>seq19092
Length=52359
Score = 93.3 bits (102), Expect = 2e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| | | | |||||| |||||||| |||||||||||||||||||| ||
Sbjct 45298 AATTTGGCCCATGCAGGTCTGGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAAC 45239
Query 11512 CAACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 45238 CAACTGAGCTAACAGGCC 45221
>seq32336
Length=121125
Score = 91.5 bits (100), Expect = 8e-14
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| ||| | | ||||||||||||| |||||||||||||| |||| ||||||
Sbjct 115119 TGGCCCATGCAAGTCTTAATCCTTCGACCTTCGTGTTATTAGCACGAC-CTCTAACCAAC 115061
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 115060 TGAGCTAATGGGCC 115047
Lambda K H
0.637 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260681982631768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |