Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq168515 183 5e-42 seq185084 147 3e-31 seq243398 140 5e-29 seq18124 138 2e-28 seq166892 131 3e-26 seq241685 129 9e-26 seq164814 129 9e-26 seq205602 123 4e-24 seq175226 91.5 2e-14 >seq168515 Length=616 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||||||||| ||||| |||||||| ||| Sbjct 550 GCCAAGCGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACTAAGCCAGCAATC 491 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| |||||||||||||| || || ||| | ||||| ||| | |||||||| | Sbjct 490 AGACGTCTAGCTCGTCGTGGTGGTGTGAAACGTATATCTGGTTTGATTTATGAAGAAACA 431 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | || | | | ||||||| |||||| || |||||||| Sbjct 430 CGTGGAGTTCTGAAAGTGTTTTTGGAAAATGTTATCCGTGATGCCGTCACATATACCGAA 371 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| | ||||| ||||| | |||||| | ||||| || ||||| | |||||| Sbjct 370 CATGCTAAGAGGAAGACAGTCACAGCTATGGATGTTGTCTACGCTTTGAAGAGACAAGGC 311 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| | ||||||||||| |||||| || Sbjct 310 CGTACTCTGTATGGTTTTGGCGGTTAATTTT 280 >seq185084 Length=52406 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| |||||||| | || ||||| Sbjct 38725 GATAACATCCAGGGAATTACGAAGCCAGCAATTCGTCGGTTGGCTCGTAGGGGAGGAGTG 38666 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| ||||||| |||| || |||||||||| || || Sbjct 38665 AAGCGTATATCTGGTCTGATCTACGAAGAGACACGTGGAGTGCTGAAGATCTTTCTAGAG 38606 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| | ||| ||||||||||| | | |||||||| || | Sbjct 38605 AATGTGATCCGTGATGCTGTTACCTACACCGAGCACGCCAGGAGAAAGACTGTTACTGCT 38546 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||| | || | || ||| | | | ||||| ||||| |||| Sbjct 38545 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTA 38487 >seq243398 Length=74992 Score = 140 bits (154), Expect = 5e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| |||||||| ||| | ||| |||| ||| | || Sbjct 73989 CTCCGTGATAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTGGCACGTAGAGGA 74048 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || ||| ||| |||| || |||| |||| || |||||||||| Sbjct 74049 GGAGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTGCTGAAGATCTTT 74108 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || || | ||||||| | || || |||||||||| | ||||| || Sbjct 74109 CTGGAAAATGTGATTCGTGATGCTGTAACTTACACTGAGCACGCTAGGAGGAAGACGGTT 74168 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | || | |||||||||| | ||||||||||| Sbjct 74169 ACTGCTATGGATGTTGTGTACGCGCTCAAGAGGCAAGGCCGTACTCTCTATGGTTTTGGT 74228 Query 16694 AGTTA 16698 |||| Sbjct 74229 GGTTA 74233 Score = 127 bits (140), Expect = 3e-25 Identities = 189/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | || || |||||||||||||| ||||| |||||||| || Sbjct 70820 GCAAAACGACATCGTAAAGTCCTCCGTGATAACATCCAAGGTATCACAAAGCCAGCAATT 70879 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||| | || ||||| |||||| || ||| | ||||||| |||| Sbjct 70880 AGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATCAGTGGTCTCATCTATGAGGAGACA 70939 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| | ||| ||| || | ||||||| | || || ||| Sbjct 70940 CGTGGCGTGCTCAAGATCTTTTTGGAGAACGTCATTCGTGATGCTGTTACTTACACTGAG 70999 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | ||||| || || | |||||| |||| ||||| | || | || || Sbjct 71000 CACGCAAGGAGAAAGACCGTGACTGCTATGGATGTCGTGTATGCTCTTAAGAGACAGGGA 71059 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||| |||||| |||||| Sbjct 71060 AGGACTTTGTATGGATTTGGAGGTTAAT 71087 >seq18124 Length=24972 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || |||||||| ||||| || || || ||| |||||||| | |||||||| Sbjct 8604 GACAACATTCAGGGAATCACAAAGCCTGCAATTCGGCGTTTGGCTCGTAGGGGTGGAGTT 8663 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | || || |||| ||||| || |||||||| || | || Sbjct 8664 AAGCGTATATCTGGTTTGATTTACGAGGAGACTCGTGGAGTGTTGAAGATATTTTTGGAG 8723 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| ||||| ||||||| | ||||||||||| | Sbjct 8724 AATGTGATTCGTGATGCTGTGACCTACACCGAACACGCTAGGAGAAAGACTGTCACTGCT 8783 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || |||||| | || | || ||| | | | || || ||||| |||| Sbjct 8784 ATGGATGTTGTTTATGCACTCAAGAGGCAGGGCAGGACTCTCTACGGATTTGGGGGTTA 8842 >seq166892 Length=140974 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || ||||| || ||||||||||| ||| | || |||||| | ||||| | Sbjct 67794 GAGATAACATTCAGGGAATTACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 67735 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||||| ||| | ||||| |||| |||| || | |||||||| | Sbjct 67734 TCAAGCGTATTTCTGGGTTGATTTATGAGGAGACACGTGGAGTGCTTAAGATCTTTTTGG 67675 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || |||||||||| | |||||||| || Sbjct 67674 AGAATGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 67615 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | || || | | | || || |||||| ||| Sbjct 67614 CTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTACGGATTTGGAGGTT 67555 Query 16698 AA 16699 || Sbjct 67554 AA 67553 >seq241685 Length=268616 Score = 129 bits (142), Expect = 9e-26 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | ||||||||||| || ||||| ||||| || || || || |||||||| | || Sbjct 81498 CTTAGGGATAACATCCAGGGTATCACAAAGCCCGCAATTCGCCGATTGGCTCGTAGGGGA 81439 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | ||||| || | ||||| |||| |||| || |||||||||| Sbjct 81438 GGCGTGAAGCGTATTTCTGGTCTGATATATGAGGAGACACGTGGCGTGCTGAAGATCTTT 81379 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||||| | ||| || |||||||| | | |||||||| Sbjct 81378 CTAGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACTGTT 81319 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || |||||| | || | || || | | | || |||||||| Sbjct 81318 ACTGCTATGGATGTTGTGTATGCACTCAAGAGGCAGGGTAGGACTCTCTACGGTTTTGGT 81259 Query 16694 AGTTAA 16699 ||||| Sbjct 81258 GGTTAA 81253 >seq164814 Length=64692 Score = 129 bits (142), Expect = 9e-26 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| |||||||| || || | |||| | | ||| Sbjct 23113 CTCCGTGATAACATCCAGGGAATCACTAAGCCAGCAATTCGGAGATTGGCGAGAAGAGGT 23172 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || ||| || | |||||||||| | | ||||||||||| || Sbjct 23173 GGAGTGAAGAGAATCAGTGGTCTGATTTATGAAGAGACGAGAGGAGTTTTGAAGATATTT 23232 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||| | ||||||| || || || ||||| |||| | |||||||| Sbjct 23233 TTGGAGAATGTTATTCGTGATGCTGTCACTTACACTGAGCATGCTAGGAGAAAGACTGTA 23292 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || ||||||| | |||||| | | ||||||||||||| Sbjct 23293 ACTGCTATGGATGTTGTTTACTCATTGAAGAGACAAGGCAGGACTCTTTATGGTTTTGGT 23352 Query 16694 AGTTAA 16699 ||||| Sbjct 23353 GGTTAA 23358 Score = 116 bits (128), Expect = 6e-22 Identities = 174/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||| |||||||| || |||||||| || || | |||| | | ||| Sbjct 16147 CTCCGAGATAACATTCAAGGAATAACAAAGCCAGCCATTCGGAGGTTGGCGAGAAGAGGT 16206 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | |||||||| | | | ||||||||||| || Sbjct 16207 GGAGTGAAGAGAATCAGCGGGCTGATTTATGAAGAAACAAGAGGAGTTTTGAAGATATTT 16266 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| || || || ||||| |||| | | |||||||| Sbjct 16267 TTGGAGAATGTGATTCGTGATGCTGTCACTTACACTGAGCATGCTAGAAGAAAGACTGTT 16326 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||| || |||| | |||||| | | ||||||||||||| Sbjct 16327 ACTGCAATGGATGTTGTTTATTCACTGAAGAGACAAGGCAGGACCCTTTATGGTTTTGGT 16386 Query 16694 AGTTAAT 16700 ||| || Sbjct 16387 GGTTGAT 16393 >seq205602 Length=15188 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| |||||||| ||||| || || || ||| |||||||| | || Sbjct 11565 CTTCGTGATAACATCCAGGGAATCACGAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 11624 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | ||||| ||| | || || |||| || | ||| |||||||| || Sbjct 11625 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGTGTATTGAAGATATTT 11684 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | ||| ||||| || |||| | |||||||| Sbjct 11685 TTGGAGAATGTGATTCGTGATGCTGTGACCTACACCGAACATGCTAGGAGAAAGACTGTT 11744 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || || || Sbjct 11745 ACTGCTATGGATGTTGTTTACGC 11767 >seq175226 Length=192474 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || ||||| || ||||| ||||| | | || ||| | | |||||| Sbjct 38555 CGTGACAATATTCAGGGAATTACAAAGCCTGCTATTAGGAGGCTAGCTAGAAGAGGTGGA 38496 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | |||||| | || ||||||| |||| || ||||||||||| || Sbjct 38495 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTGTTGAAGATCTTTCTG 38436 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| | || || |||||||||| | |||||||| || Sbjct 38435 GAAAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTTACT 38376 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | || || | | ||||||| ||||| || Sbjct 38375 GCTATGGATGTTGTTTATGCGCTTAAGAGACAGGGTAGGACTCTTTATGGATTTGGTGGT 38316 Query 16697 TAA 16699 ||| Sbjct 38315 TAA 38313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78843040995174