Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq168515 183 5e-42
seq185084 147 3e-31
seq243398 140 5e-29
seq18124 138 2e-28
seq166892 131 3e-26
seq241685 129 9e-26
seq164814 129 9e-26
seq205602 123 4e-24
seq175226 91.5 2e-14
>seq168515
Length=616
Score = 183 bits (202), Expect = 5e-42
Identities = 203/271 (75%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | | || |||||||||||||| ||||| |||||||| |||
Sbjct 550 GCCAAGCGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACTAAGCCAGCAATC 491
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||||| |||||||||||||| || || ||| | ||||| ||| | |||||||| |
Sbjct 490 AGACGTCTAGCTCGTCGTGGTGGTGTGAAACGTATATCTGGTTTGATTTATGAAGAAACA 431
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||| | || | | | ||||||| |||||| || ||||||||
Sbjct 430 CGTGGAGTTCTGAAAGTGTTTTTGGAAAATGTTATCCGTGATGCCGTCACATATACCGAA 371
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||||| | ||||| ||||| | |||||| | ||||| || ||||| | ||||||
Sbjct 370 CATGCTAAGAGGAAGACAGTCACAGCTATGGATGTTGTCTACGCTTTGAAGAGACAAGGC 311
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|||| | ||||||||||| |||||| ||
Sbjct 310 CGTACTCTGTATGGTTTTGGCGGTTAATTTT 280
>seq185084
Length=52406
Score = 147 bits (162), Expect = 3e-31
Identities = 176/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| ||||| || |||||||| || ||||| |||||||| | || |||||
Sbjct 38725 GATAACATCCAGGGAATTACGAAGCCAGCAATTCGTCGGTTGGCTCGTAGGGGAGGAGTG 38666
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| | ||||| || |||| ||||||| |||| || |||||||||| || ||
Sbjct 38665 AAGCGTATATCTGGTCTGATCTACGAAGAGACACGTGGAGTGCTGAAGATCTTTCTAGAG 38606
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||||||| | ||| ||||||||||| | | |||||||| || |
Sbjct 38605 AATGTGATCCGTGATGCTGTTACCTACACCGAGCACGCCAGGAGAAAGACTGTTACTGCT 38546
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | || || ||| | || | || ||| | | | ||||| ||||| ||||
Sbjct 38545 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTA 38487
>seq243398
Length=74992
Score = 140 bits (154), Expect = 5e-29
Identities = 178/245 (73%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || |||||||||||||| ||||| |||||||| ||| | ||| |||| ||| | ||
Sbjct 73989 CTCCGTGATAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTGGCACGTAGAGGA 74048
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| |||||| || ||| ||| |||| || |||| |||| || ||||||||||
Sbjct 74049 GGAGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTGCTGAAGATCTTT 74108
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| | | || || | ||||||| | || || |||||||||| | ||||| ||
Sbjct 74109 CTGGAAAATGTGATTCGTGATGCTGTAACTTACACTGAGCACGCTAGGAGGAAGACGGTT 74168
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | |||||| | || || || | || | |||||||||| | |||||||||||
Sbjct 74169 ACTGCTATGGATGTTGTGTACGCGCTCAAGAGGCAAGGCCGTACTCTCTATGGTTTTGGT 74228
Query 16694 AGTTA 16698
||||
Sbjct 74229 GGTTA 74233
Score = 127 bits (140), Expect = 3e-25
Identities = 189/268 (71%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||| | | || || |||||||||||||| ||||| |||||||| ||
Sbjct 70820 GCAAAACGACATCGTAAAGTCCTCCGTGATAACATCCAAGGTATCACAAAGCCAGCAATT 70879
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| |||||||| | || ||||| |||||| || ||| | ||||||| ||||
Sbjct 70880 AGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATCAGTGGTCTCATCTATGAGGAGACA 70939
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | |||||||| | ||| ||| || | ||||||| | || || |||
Sbjct 70940 CGTGGCGTGCTCAAGATCTTTTTGGAGAACGTCATTCGTGATGCTGTTACTTACACTGAG 70999
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| | | ||||| || || | |||||| |||| ||||| | || | || ||
Sbjct 71000 CACGCAAGGAGAAAGACCGTGACTGCTATGGATGTCGTGTATGCTCTTAAGAGACAGGGA 71059
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | | ||||| |||||| ||||||
Sbjct 71060 AGGACTTTGTATGGATTTGGAGGTTAAT 71087
>seq18124
Length=24972
Score = 138 bits (152), Expect = 2e-28
Identities = 174/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||| || |||||||| ||||| || || || ||| |||||||| | ||||||||
Sbjct 8604 GACAACATTCAGGGAATCACAAAGCCTGCAATTCGGCGTTTGGCTCGTAGGGGTGGAGTT 8663
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| | ||||| ||| | || || |||| ||||| || |||||||| || | ||
Sbjct 8664 AAGCGTATATCTGGTTTGATTTACGAGGAGACTCGTGGAGTGTTGAAGATATTTTTGGAG 8723
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || | ||||||| | ||| ||||| ||||||| | ||||||||||| |
Sbjct 8724 AATGTGATTCGTGATGCTGTGACCTACACCGAACACGCTAGGAGAAAGACTGTCACTGCT 8783
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | || |||||| | || | || ||| | | | || || ||||| ||||
Sbjct 8784 ATGGATGTTGTTTATGCACTCAAGAGGCAGGGCAGGACTCTCTACGGATTTGGGGGTTA 8842
>seq166892
Length=140974
Score = 131 bits (144), Expect = 3e-26
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| || ||||| || ||||||||||| ||| | || |||||| | ||||| |
Sbjct 67794 GAGATAACATTCAGGGAATTACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 67735
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| | ||||| ||| | ||||| |||| |||| || | |||||||| |
Sbjct 67734 TCAAGCGTATTTCTGGGTTGATTTATGAGGAGACACGTGGAGTGCTTAAGATCTTTTTGG 67675
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||||||| | ||| || |||||||||| | |||||||| ||
Sbjct 67674 AGAATGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 67615
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || || || | || | || || | | | || || |||||| |||
Sbjct 67614 CTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTACGGATTTGGAGGTT 67555
Query 16698 AA 16699
||
Sbjct 67554 AA 67553
>seq241685
Length=268616
Score = 129 bits (142), Expect = 9e-26
Identities = 176/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||| | ||||||||||| || ||||| ||||| || || || || |||||||| | ||
Sbjct 81498 CTTAGGGATAACATCCAGGGTATCACAAAGCCCGCAATTCGCCGATTGGCTCGTAGGGGA 81439
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || |||||| | ||||| || | ||||| |||| |||| || ||||||||||
Sbjct 81438 GGCGTGAAGCGTATTTCTGGTCTGATATATGAGGAGACACGTGGCGTGCTGAAGATCTTT 81379
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| || | ||||||| | ||| || |||||||| | | ||||||||
Sbjct 81378 CTAGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACTGTT 81319
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | |||||| | || |||||| | || | || || | | | || ||||||||
Sbjct 81318 ACTGCTATGGATGTTGTGTATGCACTCAAGAGGCAGGGTAGGACTCTCTACGGTTTTGGT 81259
Query 16694 AGTTAA 16699
|||||
Sbjct 81258 GGTTAA 81253
>seq164814
Length=64692
Score = 129 bits (142), Expect = 9e-26
Identities = 176/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| |||||||| |||||||| || || | |||| | | |||
Sbjct 23113 CTCCGTGATAACATCCAGGGAATCACTAAGCCAGCAATTCGGAGATTGGCGAGAAGAGGT 23172
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||| | || ||| || | |||||||||| | | ||||||||||| ||
Sbjct 23173 GGAGTGAAGAGAATCAGTGGTCTGATTTATGAAGAGACGAGAGGAGTTTTGAAGATATTT 23232
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||||| | ||||||| || || || ||||| |||| | ||||||||
Sbjct 23233 TTGGAGAATGTTATTCGTGATGCTGTCACTTACACTGAGCATGCTAGGAGAAAGACTGTA 23292
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | |||||| | || || ||||||| | |||||| | | |||||||||||||
Sbjct 23293 ACTGCTATGGATGTTGTTTACTCATTGAAGAGACAAGGCAGGACTCTTTATGGTTTTGGT 23352
Query 16694 AGTTAA 16699
|||||
Sbjct 23353 GGTTAA 23358
Score = 116 bits (128), Expect = 6e-22
Identities = 174/247 (70%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| ||||||||||| |||||||| || |||||||| || || | |||| | | |||
Sbjct 16147 CTCCGAGATAACATTCAAGGAATAACAAAGCCAGCCATTCGGAGGTTGGCGAGAAGAGGT 16206
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| ||| | || || || | |||||||| | | | ||||||||||| ||
Sbjct 16207 GGAGTGAAGAGAATCAGCGGGCTGATTTATGAAGAAACAAGAGGAGTTTTGAAGATATTT 16266
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| || || | ||||||| || || || ||||| |||| | | ||||||||
Sbjct 16267 TTGGAGAATGTGATTCGTGATGCTGTCACTTACACTGAGCATGCTAGAAGAAAGACTGTT 16326
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | |||||| | || ||| || |||| | |||||| | | |||||||||||||
Sbjct 16327 ACTGCAATGGATGTTGTTTATTCACTGAAGAGACAAGGCAGGACCCTTTATGGTTTTGGT 16386
Query 16694 AGTTAAT 16700
||| ||
Sbjct 16387 GGTTGAT 16393
>seq205602
Length=15188
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| ||||||||||| |||||||| ||||| || || || ||| |||||||| | ||
Sbjct 11565 CTTCGTGATAACATCCAGGGAATCACGAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 11624
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| || ||| | ||||| ||| | || || |||| || | ||| |||||||| ||
Sbjct 11625 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGTGTATTGAAGATATTT 11684
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| || || | ||||||| | ||| ||||| || |||| | ||||||||
Sbjct 11685 TTGGAGAATGTGATTCGTGATGCTGTGACCTACACCGAACATGCTAGGAGAAAGACTGTT 11744
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
|| | |||||| | || || ||
Sbjct 11745 ACTGCTATGGATGTTGTTTACGC 11767
>seq175226
Length=192474
Score = 91.5 bits (100), Expect = 2e-14
Identities = 166/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || || || || ||||| || ||||| ||||| | | || ||| | | ||||||
Sbjct 38555 CGTGACAATATTCAGGGAATTACAAAGCCTGCTATTAGGAGGCTAGCTAGAAGAGGTGGA 38496
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| ||| | | |||||| | || ||||||| |||| || ||||||||||| ||
Sbjct 38495 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTGTTGAAGATCTTTCTG 38436
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
| | || || | ||||||| | || || |||||||||| | |||||||| ||
Sbjct 38435 GAAAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTTACT 38376
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| |||||| | || ||||| | || | || || | | ||||||| ||||| ||
Sbjct 38375 GCTATGGATGTTGTTTATGCGCTTAAGAGACAGGGTAGGACTCTTTATGGATTTGGTGGT 38316
Query 16697 TAA 16699
|||
Sbjct 38315 TAA 38313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78843040995174
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