Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq104635 183 6e-42
seq93376 98.7 2e-16
seq103918 80.6 5e-11
>seq104635
Length=2867
Score = 183 bits (202), Expect = 6e-42
Identities = 335/489 (69%), Gaps = 4/489 (1%)
Strand=Plus/Minus
Query 7266 GTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTG 7325
|||| |||| || || |||||||| | |||||||||| ||| ||| | |||||| ||
Sbjct 2763 GTATCGCATATCAGTGCCAACATGATCGTTATAAATATGCCTCATATTTAATTCATCCTG 2704
Query 7326 ACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATA 7385
||| || | | | ||||| ||||| | || | || |||||||| ||||||||
Sbjct 2703 CTTGAATAGGATAATTACATTTGCGTTATCACGTATTAAATGTTTGGGTATACGTGTATA 2644
Query 7386 AGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTT 7445
|||||||| | ||||| || |||| | || || || ||||| || || | |
Sbjct 2643 GGTTTGACATAAGTAGAAACTATCAATGTTATTATGACGCCCCATACAAAAGTATGAACG 2584
Query 7446 GATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGC 7505
|| | || ||||||||||| |||||||| || |||||||| | || || |||||
Sbjct 2583 AATATTATTTTGTTTTTCACATGCAACATCATCGAATATCATTATTGAATTTTTTTTAGC 2524
Query 7506 ATCTTCAGGCTTGATTACAGCTTCATGTTCGCTG--AATGTGAAGAATCCAATACCATCA 7563
| | ||| | || ||| ||| ||| ||| || |||| || || || || | |
Sbjct 2523 TTTGTTAGGTTCTATCACA--TTCTCGTTTTCTGAAAACTTGAAAAAACCCATTCCCTTA 2466
Query 7564 ATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAA 7623
|| |||| | ||| | || | |||||||||||||||| | | || ||||| |||
Sbjct 2465 ATTGGTTTTATTAGTTTTTCTAAATACTGATACTTTGGTTGATGTAACGATTTTGAATAA 2406
Query 7624 AGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTC 7683
| || ||||| |||||| |||| || |||||| | |||| | | ||||| ||||
Sbjct 2405 ATGTAGATATTTTCAAACTTCAATCCATTTGGACTTTCAATTAAACTCAGCATGACATTT 2346
Query 7684 GTCTTTCCACAGTTTGATGGCCCGCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCA 7743
|| || || || |||||||| ||| || | | | | || | || || |||| || |
Sbjct 2345 GTTTTACCGCAATTTGATGGACCGACAATTAGAGTACGCATTGTATTCGGTAGTAGAGAA 2286
Query 7744 CCGTGTCGT 7752
|| ||||||
Sbjct 2285 CCATGTCGT 2277
>seq93376
Length=684
Score = 98.7 bits (108), Expect = 2e-16
Identities = 235/353 (67%), Gaps = 2/353 (1%)
Strand=Plus/Minus
Query 5308 TAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTT 5367
|||||||| |||||| | ||| || |||| ||||||||| ||| ||| || ||||
Sbjct 380 TAAACTCTTTCCACATCATTCCCTTGAGAGTTCGATTGAAACGCTCAACTATTGAAGCTT 321
Query 5368 TGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATT 5427
| | |||| ||||||||||| | || | | | ||||| |||| || ||||
Sbjct 320 TCATTATGCTAAATGTTGAATAATGGTTAACATGATTAATTTTCATAAGATGTTGAAATT 261
Query 5428 CTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGC- 5486
|||| ||| |||| || || || | ||| || ||||| |||| | |||||||||
Sbjct 260 CTTTATTGAAAAATTCCTTTCCATCATCTGTTTGAAGATTTCTAGGTTTTCGACCTTGCT 201
Query 5487 TGAAG-TACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAAC 5545
|||| || |||| ||| |||| || |||||||||| ||||
Sbjct 200 TGAANATATTTCTCTCATTGCATGACTGACTGAAGTTGCATTTTTAGACTTGATTGCTCT 141
Query 5546 TGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATT 5605
| ||| ||||||||||| ||| |||| || | || | ||| | | ||||||||||
Sbjct 140 AGTCCATGCATATTTTGAGAATGTATCAATTACAGTTAAAAGAAAACGGAATCCTTTATT 81
Query 5606 GACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGA 5658
| ||||| | | ||| || || || || |||||||| |||||||
Sbjct 80 TTTCGAAGCATAGGCACCCATTTCCACTAAATCTGCTTGCCATAAATCATCGA 28
>seq103918
Length=1077
Score = 80.6 bits (88), Expect = 5e-11
Identities = 94/127 (74%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 6175 GCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCA 6234
|| || || || ||||| ||||| || ||||| ||||| | ||| | | | ||||||
Sbjct 951 GCTTCTCTTAGTTCTTCTATAATGGAAATGATCTCATTATTATGATTAGTATGTCCAGCT 892
Query 6235 GCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAA 6294
| | ||||| | || | | |||||| ||||| |||||||| ||||||||||||||
Sbjct 891 GATGTTGATGCAAGCAAGATCCTCAAACGCTCAACAAGCTCATTAGGATCATCCCAGTAT 832
Query 6295 ACATAAT 6301
| |||||
Sbjct 831 AAATAAT 825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97678980118572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |