Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq104635 183 6e-42 seq93376 98.7 2e-16 seq103918 80.6 5e-11 >seq104635 Length=2867 Score = 183 bits (202), Expect = 6e-42 Identities = 335/489 (69%), Gaps = 4/489 (1%) Strand=Plus/Minus Query 7266 GTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTG 7325 |||| |||| || || |||||||| | |||||||||| ||| ||| | |||||| || Sbjct 2763 GTATCGCATATCAGTGCCAACATGATCGTTATAAATATGCCTCATATTTAATTCATCCTG 2704 Query 7326 ACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATA 7385 ||| || | | | ||||| ||||| | || | || |||||||| |||||||| Sbjct 2703 CTTGAATAGGATAATTACATTTGCGTTATCACGTATTAAATGTTTGGGTATACGTGTATA 2644 Query 7386 AGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTT 7445 |||||||| | ||||| || |||| | || || || ||||| || || | | Sbjct 2643 GGTTTGACATAAGTAGAAACTATCAATGTTATTATGACGCCCCATACAAAAGTATGAACG 2584 Query 7446 GATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGC 7505 || | || ||||||||||| |||||||| || |||||||| | || || ||||| Sbjct 2583 AATATTATTTTGTTTTTCACATGCAACATCATCGAATATCATTATTGAATTTTTTTTAGC 2524 Query 7506 ATCTTCAGGCTTGATTACAGCTTCATGTTCGCTG--AATGTGAAGAATCCAATACCATCA 7563 | | ||| | || ||| ||| ||| ||| || |||| || || || || | | Sbjct 2523 TTTGTTAGGTTCTATCACA--TTCTCGTTTTCTGAAAACTTGAAAAAACCCATTCCCTTA 2466 Query 7564 ATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAA 7623 || |||| | ||| | || | |||||||||||||||| | | || ||||| ||| Sbjct 2465 ATTGGTTTTATTAGTTTTTCTAAATACTGATACTTTGGTTGATGTAACGATTTTGAATAA 2406 Query 7624 AGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTC 7683 | || ||||| |||||| |||| || |||||| | |||| | | ||||| |||| Sbjct 2405 ATGTAGATATTTTCAAACTTCAATCCATTTGGACTTTCAATTAAACTCAGCATGACATTT 2346 Query 7684 GTCTTTCCACAGTTTGATGGCCCGCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCA 7743 || || || || |||||||| ||| || | | | | || | || || |||| || | Sbjct 2345 GTTTTACCGCAATTTGATGGACCGACAATTAGAGTACGCATTGTATTCGGTAGTAGAGAA 2286 Query 7744 CCGTGTCGT 7752 || |||||| Sbjct 2285 CCATGTCGT 2277 >seq93376 Length=684 Score = 98.7 bits (108), Expect = 2e-16 Identities = 235/353 (67%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 5308 TAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTT 5367 |||||||| |||||| | ||| || |||| ||||||||| ||| ||| || |||| Sbjct 380 TAAACTCTTTCCACATCATTCCCTTGAGAGTTCGATTGAAACGCTCAACTATTGAAGCTT 321 Query 5368 TGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATT 5427 | | |||| ||||||||||| | || | | | ||||| |||| || |||| Sbjct 320 TCATTATGCTAAATGTTGAATAATGGTTAACATGATTAATTTTCATAAGATGTTGAAATT 261 Query 5428 CTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGC- 5486 |||| ||| |||| || || || | ||| || ||||| |||| | ||||||||| Sbjct 260 CTTTATTGAAAAATTCCTTTCCATCATCTGTTTGAAGATTTCTAGGTTTTCGACCTTGCT 201 Query 5487 TGAAG-TACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAAC 5545 |||| || |||| ||| |||| || |||||||||| |||| Sbjct 200 TGAANATATTTCTCTCATTGCATGACTGACTGAAGTTGCATTTTTAGACTTGATTGCTCT 141 Query 5546 TGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATT 5605 | ||| ||||||||||| ||| |||| || | || | ||| | | |||||||||| Sbjct 140 AGTCCATGCATATTTTGAGAATGTATCAATTACAGTTAAAAGAAAACGGAATCCTTTATT 81 Query 5606 GACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGA 5658 | ||||| | | ||| || || || || |||||||| ||||||| Sbjct 80 TTTCGAAGCATAGGCACCCATTTCCACTAAATCTGCTTGCCATAAATCATCGA 28 >seq103918 Length=1077 Score = 80.6 bits (88), Expect = 5e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6175 GCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCA 6234 || || || || ||||| ||||| || ||||| ||||| | ||| | | | |||||| Sbjct 951 GCTTCTCTTAGTTCTTCTATAATGGAAATGATCTCATTATTATGATTAGTATGTCCAGCT 892 Query 6235 GCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAA 6294 | | ||||| | || | | |||||| ||||| |||||||| |||||||||||||| Sbjct 891 GATGTTGATGCAAGCAAGATCCTCAAACGCTCAACAAGCTCATTAGGATCATCCCAGTAT 832 Query 6295 ACATAAT 6301 | ||||| Sbjct 831 AAATAAT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97678980118572