Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq118536 181 1e-40 >seq118536 Length=58152 Score = 181 bits (200), Expect = 1e-40 Identities = 566/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || || || |||||||| || |||| || || Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309 |||| ||| ||| | | | | | || ||| || | | |||||| ||| Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCG 25430 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| ||| Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| || |||||||| | ||| ||||| | | ||| |||||| || || || ||| Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCT 25310 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || || ||||||||||| | | ||| || | || ||| ||||| | Sbjct 25309 TCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATCGATCCAACGT 25250 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 | ||||| | |||||||| | ||||| || || || || | || || | | Sbjct 25249 AGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTG 25190 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 ||||||| | | || || | || | || | | ||||| ||||| || || || Sbjct 25189 CTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGG 25130 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||||||||| || || || || ||||||||| | ||||||| || || |||||| Sbjct 25129 ATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTCT 25070 Query 33670 GTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | || | | |||| || | ||||| || || ||||| ||| || ||||| || Sbjct 25069 -TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGC 25011 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 | || || | || |||| |||| | || ||||| | | ||| | | | |||| Sbjct 25010 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATC 24951 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||||| ||| |||||||| | ||||| || || || || ||||| ||||| | Sbjct 24950 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 24891 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATA 33879 ||| || | ||||| |||||||| ||| Sbjct 24890 CCAAATTTGTGGGTATTGAATTGGGAACATA 24860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620969981160880