Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq28647 105 6e-18 seq146937 93.3 4e-14 seq179153 91.5 1e-13 seq72314 86.0 6e-12 >seq28647 Length=54725 Score = 105 bits (116), Expect = 6e-18 Identities = 150/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGA-ATCAAACGACACCATCGAGCAAGTCAAACA 26851 |||||||| | || || ||||| | || | | | |||||||| || | || ||| Sbjct 9479 ACTGGAAAGACCATAACACTCGAAGTTGAGAGCTCA-GACACCATTGACAATGTTAAAAC 9537 Query 26852 AAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAA 26911 ||||||| ||||| ||||| || ||||| || |||||||| | ||||| | || || Sbjct 9538 AAAGATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATGCTGGAAA 9597 Query 26912 ACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATC 26969 |||||||||||||| | ||| || | || || ||||||||||| || ||||| || || Sbjct 9598 ACAACTCGAAGATGGTCGAACACTT--GCTGATTATAACATTCAGAAGGAATCCACACTC 9655 Query 26970 CATCTGGTCCTGAGACTTAGAGGAG 26994 ||||| || || | ||| | |||| Sbjct 9656 CATCTTGTGTTGCGTCTTCGCGGAG 9680 >seq146937 Length=209544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||| || ||| | |||||| | ||| | ||| | Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| ||||| || || || || || || || Sbjct 83228 GACACTATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 83287 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| | |||| || ||| || ||||||||||| | |||| | | ||| || || || Sbjct 83288 CAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCT-AGCTGATTACAA 83346 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || ||||| || | || ||||||| Sbjct 83347 CATCCAGAAGGAATCGACCCTTCACTTGGTCCT 83379 >seq179153 Length=7583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | || ||||| | || || |||| | || Sbjct 4755 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4696 Query 26829 GACACCATCGAGCAA-GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || || || ||| ||| ||| ||||| ||||| || ||||| ||||| Sbjct 4695 GACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCA 4636 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTAT 26945 |||||| | |||| | || ||||||||||| |||| | ||| || | || || || Sbjct 4635 ACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTT--GCTGATTAC 4578 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || ||||| ||| ||||||| || || | ||| | ||||| Sbjct 4577 AATATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528 >seq72314 Length=63918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || |||||||||||| | ||||| | ||| | || Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || || || ||| || || ||||| || || || ||||| Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || |||| | || |||||| | ||||||| || | | |||||||| Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 55637 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGGAA 55686 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 26754 TTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATC 26813 ||||| | | ||| | |||| | ||||| ||||| |||||||||||| | ||||| | Sbjct 54532 TTTTATTAATACAGA-TGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTG 54590 Query 26814 GAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGG 26873 ||| | ||| ||||| || || | || || || ||| ||||| || || Sbjct 54591 GAAGTTGAAAGCTCGGACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGT 54650 Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC 26933 || || || ||||| || || || |||| | || |||||| | ||||||| | | Sbjct 54651 ATCCCGCCGGATCAGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACT 54710 Query 26934 GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGA 26993 || || |||||||||||||| || || || |||| || || || || || || || Sbjct 54711 CTCGCAGATTATAACATTCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGT 54770 Query 26994 GG 26995 || Sbjct 54771 GG 54772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477143137508960