Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq146937 111 1e-19 seq28647 104 2e-17 seq188529 96.9 3e-15 seq196472 91.5 1e-13 seq72314 91.5 1e-13 seq175354 89.7 4e-13 seq140002 86.0 5e-12 seq182928 84.2 2e-11 seq242921 82.4 7e-11 >seq146937 Length=209544 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||| || ||| | || ||| | |||||||| | | Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || |||||| ||||| || || || || || || || Sbjct 83228 GACACTATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 83287 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || |||||| || ||| |||||||||||||| | ||||| | | ||| ||||| || Sbjct 83288 CAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCT-AGCTGATTACAA 83346 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || ||||| || |||| || || Sbjct 83347 CATCCAGAAGGAATCGACCCTTCACTTGGT 83376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| |||||| | || ||| | || || || | | Sbjct 82940 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACAATCACCCTTGAGGTTGAAAGCTCC 82999 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 83000 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 83059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| |||||||| | |||| | | ||| || ||| Sbjct 83060 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTAGAACCCTAGCCGACTACAAC 83119 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || |||| || ||| Sbjct 83120 ATCCAGAAGGAATCGACCCTTCACTTGGTG 83149 >seq28647 Length=54725 Score = 104 bits (114), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 |||||||| | || || ||||||| ||| | |||||||| || | || ||| | Sbjct 9479 ACTGGAAAGACCATAACACTCGAAGTTGAGAGCTCAGACACCATTGACAATGTTAAAACA 9538 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| ||||| || ||||| || ||||| || | ||||| | || || Sbjct 9539 AAGATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATGCTGGAAAA 9598 Query 24135 CAACTCGAAGATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTC 24192 ||||||||||||| ||| || | || |||||||||||||| || ||||| ||| | | Sbjct 9599 CAACTCGAAGATGGTCGAACACTT--GCTGATTATAACATTCAGAAGGAATCCACACTCC 9656 Query 24193 ATTTAGTGTT 24202 || | ||||| Sbjct 9657 ATCTTGTGTT 9666 >seq188529 Length=122975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| ||| | ||||||||| | ||||| |||| || ||| Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 109087 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| ||||| ||||| || || || || || Sbjct 109088 GACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGACCAG 109147 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||| || |||| | | || |||||||| ||||||| || | || | || ||||||| Sbjct 109148 CAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTT--GCTGATTATA 109205 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || || || ||| ||||| | ||||| | ||||| ||||| Sbjct 109206 ACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGG 109254 >seq196472 Length=12654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||| || || || || || ||||| Sbjct 7987 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 8046 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| | || |||||| | ||||||| ||| | |||||||| Sbjct 8047 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 8106 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| | || | || ||||| || || Sbjct 8107 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 8154 >seq72314 Length=63918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| ||||| || ||| | ||||| | ||||| ||| | Sbjct 55001 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 55060 Query 24050 CGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| || || | || || || ||| || || || ||||| || || || || | Sbjct 55061 GGACACAATTGATAATGTTAAGACGAAA-ATCCAAGATAAGGAAGGTATCCCGCCAGACC 55119 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||||| ||||||| | || |||||| | ||||||| |||| | ||||||| Sbjct 55120 AGCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATA 55179 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || ||||| || |||| | || | || ||||| || || Sbjct 55180 ACATCCAGAAGGAATCCACTCTTCACCTTGTTCTCAGGTTGAGGGGTGG 55228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| || || |||||||| || || ||||| Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| | || || ||| | ||||||| || | | || ||||| Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || ||| | || |||| Sbjct 55637 CATTCAAAAGGAGTCAACACTCCACCTAGT 55666 >seq175354 Length=42077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| | | ||| | | |||||| | Sbjct 17931 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTAGTACGCTTAAGGTCGAGAACTCA 17872 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| || ||||| || || ||||| |||||| Sbjct 17871 GACACCATTGACAATGTCAAGGTAAAGATCCAGGATAAAGAGGGTATTCCTCCTGATCAA 17812 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | ||||||||||| |||||||| |||| | || || ||| Sbjct 17811 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGATAGAACTCTTGCTGACTACAAC 17752 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 17751 ATCCAGAAAGAGTCCAC 17735 >seq140002 Length=100703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || ||| | ||||| | ||||| ||| | Sbjct 55789 ATGCAAATCTTTGTGAAAACCTTGACCGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 55848 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||| ||| || || ||||| || || || || || Sbjct 55849 GACACCATCGACAATGTTAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTGACCAG 55908 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || |||| | || ||||| || || |||| || || ||| ||||| || Sbjct 55909 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAG-GACACTAGCTGATTACAA 55967 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || ||||| || | ||||| ||| Sbjct 55968 CATCCAGAAGGAATCAACCCTCCATTTGGTG 55998 >seq182928 Length=15200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| | ||||| | || |||||| | Sbjct 4380 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 4439 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| || || || || || ||||| |||||| Sbjct 4440 GACACCATTGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 4499 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || |||||| | ||||||||||| |||||| Sbjct 4500 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGAT 4535 >seq242921 Length=127737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| |||| || ||| | Sbjct 48879 ATGCAAATCTTTGTAAAGACGCTCACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 48938 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 48939 GACACTATTGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCAG 48998 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | ||| || ||| Sbjct 48999 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTACAAC 49058 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || || || |||| Sbjct 49059 ATCCAAAAGGAGTCCACCCTTCA 49081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428605509037290