Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq72314 95.1 1e-14
seq196472 93.3 4e-14
seq188529 93.3 4e-14
seq184254 87.8 2e-12
seq28647 84.2 2e-11
seq146937 82.4 6e-11
>seq72314
Length=63918
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| || || | || |||||||| || || | ||| ||| |
Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || || |||||| ||||| |||||| | || ||||
Sbjct 55517 GGACACGATTG-ACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATC 55575
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || || |||| ||| || |||||||| ||||||| | || | || || ||||
Sbjct 55576 AGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATA 55635
Query 115464 ACATTCAAAAAGAGTCTAC 115482
|||||||||| ||||| ||
Sbjct 55636 ACATTCAAAAGGAGTCAAC 55654
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| |
Sbjct 55001 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 55060
Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| | || || ||||| ||||| ||||| |||| || ||
Sbjct 55061 GGACACAATTGATAATGTTAAGACGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 55120
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || || |||| ||| || || ||||||||||||| | ||| |||| ||||||||
Sbjct 55121 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 55180
Query 115465 CATTCAAAAAGAGTCTACT 115483
||| || || || || |||
Sbjct 55181 CATCCAGAAGGAATCCACT 55199
>seq196472
Length=12654
Score = 93.3 bits (102), Expect = 4e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438
||||| || || |||| |||||||||||| | |||| ||| || ||||||||||||
Sbjct 8249 GATAAGGAGGGTATCCCACCAGATCAGCAAAGATTGATTTTTGCAGGGAAACAATTAGAA 8308
Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTAC 115482
|||| | ||| |||| ||||||||||||||||| ||||| ||
Sbjct 8309 GATGGAAGAACTCTGGCTGATTATAACATTCAAAAGGAGTCGAC 8352
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||||||||| || || | || |||||||| || || | ||| ||| |
Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | | ||||| || || |||||| || || || || |||| ||||
Sbjct 7987 GGACAC-GATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATC 8045
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || || |||| ||| || || ||||||||||||| ||| |||| |||||||
Sbjct 8046 AGCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATA 8105
Query 115464 ACATTCAAAAAGAGTCTAC 115482
|||| || || || || ||
Sbjct 8106 ACATCCAGAAGGAATCCAC 8124
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| || || ||||| | |||||||||||||| || | ||| ||| |
Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || || || || ||||||||||| | || || |
Sbjct 8443 AGACACGATTG-ACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACC 8501
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || || || | ||| || || || || || |||| | ||| |||| ||||| |
Sbjct 8502 AGCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACA 8561
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513
| || || || |||||||| | ||| | |||||||| || | || |||
Sbjct 8562 ATATCCAGAAGGAGTCTACACTCCATCTTGTGTTGAGGCTGAGGGGTGGA 8611
>seq188529
Length=122975
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343
||||| || ||||| || || ||||| |||||||||||||| |||| ||| | ||
Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 109087
Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
| |||| ||| | || || |||||| || || ||||| | ||| ||| |
Sbjct 109088 G--ACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGACC 109145
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || | || | ||| || || ||| | ||||||| | || | || |||||||
Sbjct 109146 AGCAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATA 109205
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||| || || ||||| || | ||| |||||||| | ||| | |||||
Sbjct 109206 ACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGG 109254
>seq184254
Length=183585
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438
|||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || |||
Sbjct 180576 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 180635
Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
|||| ||| |||| ||||| || ||||| ||||| || ||| | || | || |||
Sbjct 180636 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTTG 180695
Query 115499 AGATTGCGAGGAGGAA 115514
|| | | |||||||
Sbjct 180696 AGGCTCAGGGGAGGAA 180711
>seq28647
Length=54725
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 115286 ATGCAAATT----TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341
||||||||| || ||||| || || || ||||| ||||| || ||||| |||
Sbjct 9451 ATGCAAATTAATCTTCGTCAAGACCCTTACTGGAAAGACCATAACACTCGAAGTTGAGAG 9510
Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400
| ||||| ||| |||| || ||| ||| ||| || || ||||| | || |
Sbjct 9511 CTCAGACACCATTG-ACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCAG 9569
Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460
| || ||||| | |||||||| || |||||| | ||||||| ||| | || ||||
Sbjct 9570 ACCAACAAAGGTTAATTTATGCTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATT 9629
Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAG 115511
|||||||||| || || || || | ||| | |||||| | | || ||||
Sbjct 9630 ATAACATTCAGAAGGAATCCACACTCCATCTTGTGTTGCGTCTTCGCGGAG 9680
>seq146937
Length=209544
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| || ||| | || || |||||||| || | || |||| |
Sbjct 83852 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 83911
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| ||| |||| || || || ||| || || || || | ||| |||||
Sbjct 83912 GATACTATTG-ACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCA 83970
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || || |||| ||| || || || || ||||||| | ||| |||| ||||||||
Sbjct 83971 GCAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAA 84030
Query 115465 CATTCAAAAAGAGTCTACT 115483
||| || || ||||| |||
Sbjct 84031 CATCCAGAAGGAGTCGACT 84049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424027719558160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |