Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq72314 95.1 1e-14 seq196472 93.3 4e-14 seq188529 93.3 4e-14 seq184254 87.8 2e-12 seq28647 84.2 2e-11 seq146937 82.4 6e-11 >seq72314 Length=63918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | || |||||||| || || | ||| ||| | Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || |||||| ||||| |||||| | || |||| Sbjct 55517 GGACACGATTG-ACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATC 55575 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || |||| ||| || |||||||| ||||||| | || | || || |||| Sbjct 55576 AGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATA 55635 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||| ||||| || Sbjct 55636 ACATTCAAAAGGAGTCAAC 55654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| | Sbjct 55001 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 55060 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||||| ||||| ||||| |||| || || Sbjct 55061 GGACACAATTGATAATGTTAAGACGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 55120 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || ||||||||||||| | ||| |||| |||||||| Sbjct 55121 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 55180 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| || || || || ||| Sbjct 55181 CATCCAGAAGGAATCCACT 55199 >seq196472 Length=12654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| || || |||| |||||||||||| | |||| ||| || |||||||||||| Sbjct 8249 GATAAGGAGGGTATCCCACCAGATCAGCAAAGATTGATTTTTGCAGGGAAACAATTAGAA 8308 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTAC 115482 |||| | ||| |||| ||||||||||||||||| ||||| || Sbjct 8309 GATGGAAGAACTCTGGCTGATTATAACATTCAAAAGGAGTCGAC 8352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || |||||||| || || | ||| ||| | Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || |||||| || || || || |||| |||| Sbjct 7987 GGACAC-GATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATC 8045 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || |||| ||| || || ||||||||||||| ||| |||| ||||||| Sbjct 8046 AGCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATA 8105 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || || || || Sbjct 8106 ACATCCAGAAGGAATCCAC 8124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || || ||||| | |||||||||||||| || | ||| ||| | Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || || || ||||||||||| | || || | Sbjct 8443 AGACACGATTG-ACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACC 8501 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || || | ||| || || || || || |||| | ||| |||| ||||| | Sbjct 8502 AGCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACA 8561 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 | || || || |||||||| | ||| | |||||||| || | || ||| Sbjct 8562 ATATCCAGAAGGAGTCTACACTCCATCTTGTGTTGAGGCTGAGGGGTGGA 8611 >seq188529 Length=122975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 ||||| || ||||| || || ||||| |||||||||||||| |||| ||| | || Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 109087 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | || || |||||| || || ||||| | ||| ||| | Sbjct 109088 G--ACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGACC 109145 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | || | ||| || || ||| | ||||||| | || | || ||||||| Sbjct 109146 AGCAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATA 109205 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || || ||||| || | ||| |||||||| | ||| | ||||| Sbjct 109206 ACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGG 109254 >seq184254 Length=183585 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || ||| Sbjct 180576 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 180635 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| |||| ||||| || ||||| ||||| || ||| | || | || ||| Sbjct 180636 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTTG 180695 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 180696 AGGCTCAGGGGAGGAA 180711 >seq28647 Length=54725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 115286 ATGCAAATT----TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||||||||| || ||||| || || || ||||| ||||| || ||||| ||| Sbjct 9451 ATGCAAATTAATCTTCGTCAAGACCCTTACTGGAAAGACCATAACACTCGAAGTTGAGAG 9510 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | ||||| ||| |||| || ||| ||| ||| || || ||||| | || | Sbjct 9511 CTCAGACACCATTG-ACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCAG 9569 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 | || ||||| | |||||||| || |||||| | ||||||| ||| | || |||| Sbjct 9570 ACCAACAAAGGTTAATTTATGCTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATT 9629 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAG 115511 |||||||||| || || || || | ||| | |||||| | | || |||| Sbjct 9630 ATAACATTCAGAAGGAATCCACACTCCATCTTGTGTTGCGTCTTCGCGGAG 9680 >seq146937 Length=209544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || ||| | || || |||||||| || | || |||| | Sbjct 83852 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 83911 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| |||| || || || ||| || || || || | ||| ||||| Sbjct 83912 GATACTATTG-ACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCA 83970 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || || || ||||||| | ||| |||| |||||||| Sbjct 83971 GCAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAA 84030 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| || || ||||| ||| Sbjct 84031 CATCCAGAAGGAGTCGACT 84049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424027719558160