Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq72314 107 2e-18 seq224189 102 7e-17 seq146937 100 2e-16 seq188529 96.9 3e-15 seq196472 93.3 3e-14 seq24881 89.7 4e-13 seq242921 86.0 5e-12 >seq72314 Length=63918 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| ||||| |||||||| || || ||||||||||||| || | Sbjct 55903 AGCCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGCCAGTGTCCTA 55844 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| ||||| || ||| | || |||| ||| |||||| || | ||||| Sbjct 55843 CCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATTCCCTCC 55784 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || || | | |||||| | | | | ||||| | ||| ||||| ||| Sbjct 55783 TTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAGTGTG 55724 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||| || | ||||| || || || |||||| Sbjct 55723 ATGGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCATT 55685 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || | |||||| || || | || || || ||||||||||| ||||| || || || Sbjct 54773 CCCACCCCTTAGCCTGAGAACTAGGTGGAGGGTTGACTCCTTTTGAATGTTATAATCTGC 54714 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | || ||||||||||| || ||| |||| |||| ||| || ||| || Sbjct 54713 GAGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGCCTCTGCTGATCCGGCGG 54654 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCC 16885 | ||||| ||||| ||||| | ||| || | | | |||| ||| || || Sbjct 54653 GATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTATCTATCGTGT--CCGAGCTTTCA 54596 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||||| || | ||||| ||||| |||||||| Sbjct 54595 ACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATCTGCAT 54546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| || | || | | || ||||||||| Sbjct 55660 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGT 55601 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| || ||| || | ||| || || || ||||| Sbjct 55600 TTCCCTGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTG 55541 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| ||||| ||||| |||||||| || Sbjct 55540 GCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTT 55481 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || |||||| Sbjct 55480 AAGGTCTTAACAAAGATTTGCATT 55457 >seq224189 Length=50442 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| || || | ||| | ||| Sbjct 16416 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCC 16475 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || |||| |||||||| |||||| || | ||| || ||||| Sbjct 16476 TCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 16535 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | |||||| || || || | |||||||| Sbjct 16536 TGGATCTTTGC--CTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGG 16593 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || ||||| ||||| || || |||||||| || Sbjct 16594 TCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 16630 >seq146937 Length=209544 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||| || || |||| ||| | | || ||||| || Sbjct 84054 TGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCCAGAGTTCTTCCATCTTCCAACTGC 83995 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| || ||| || | ||||| ||||| ||| | Sbjct 83994 TTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 83935 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||| ||| |||| |||| ||||||||||| || ||| Sbjct 83934 GCCTTCACATTGTCAATAGTATCGGAACTCTCCACCTCCAAAGTGATGGTTTTCCCTGTC 83875 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||| || |||||||||||||| Sbjct 83874 AACGTCTTCACAAAAATCTGCAT 83852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || |||||||||||||| | |||| | |||| Sbjct 83151 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCT 83092 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || | || ||| |||||| || | || |||||||| Sbjct 83091 TCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCC 83032 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||||| | || || | |||||| ||| Sbjct 83031 TGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTT 82972 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| || || |||||||| Sbjct 82971 TTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 82940 >seq188529 Length=122975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| || ||||| || || | ||| | ||||||| || Sbjct 109458 TGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 109399 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | || ||||| || ||||| Sbjct 109398 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 109339 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| ||||| |||||||| ||||| ||| Sbjct 109338 GCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTC 109279 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||||||||||||| Sbjct 109278 AAAGTTTTGACAAAAATCTGCAT 109256 >seq196472 Length=12654 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||||| || | ||| || || |||||||| || || ||||| || |||| ||| | Sbjct 8601 AGCCTCAACACAAGATGGAGTGTAGACTCCTTCTGGATATTGTAATCAGCCAGGGTCCTA 8542 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| || || || ||| | || |||| ||| |||||| || | || ||| Sbjct 8541 CCATCCTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGTATACCTTCT 8482 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || || | | |||||| | | | | ||||| | ||| ||||| ||| Sbjct 8481 TTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAATGTG 8422 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||||| || | ||||| || || || |||||| Sbjct 8421 ATGGTTTTTCCCGTTAAGGTTTTAACGAAGATTTGCATT 8383 >seq24881 Length=242481 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| | |||||||| || || | ||| | ||| Sbjct 141195 AGCACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACCATCC 141136 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || |||| |||||||| |||||| || | ||| || ||||| Sbjct 141135 TCAAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTTGTCC 141076 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | |||||| || || || | ||| |||| Sbjct 141075 TGGATCTTTGC--CTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAATGG 141018 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || ||||| ||||| || || |||||||| || Sbjct 141017 TCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 140981 >seq242921 Length=127737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| || | ||| | ||||| | || Sbjct 49537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCCTCGAGCTGC 49478 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| |||| | || ||| || || ||| | ||| || ||||| || ||| Sbjct 49477 TTACCAGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTT 49418 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| | ||| || | ||||||||| || || | Sbjct 49417 GC--CTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAG 49360 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| |||||||||||||| Sbjct 49359 TCAAAGTTTTCACAAAAATCTGCAT 49335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403834404294820