Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq118536 149 7e-31 seq181537 91.5 2e-13 seq120958 89.7 6e-13 seq186096 87.8 2e-12 seq187734 86.0 7e-12 seq33685 86.0 7e-12 seq234697 84.2 2e-11 seq176443 84.2 2e-11 seq81836 84.2 2e-11 seq239066 82.4 8e-11 seq200523 82.4 8e-11 seq173160 82.4 8e-11 seq95032 82.4 8e-11 seq76224 82.4 8e-11 >seq118536 Length=58152 Score = 149 bits (164), Expect = 7e-31 Identities = 583/901 (65%), Gaps = 28/901 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | || || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 25739 CATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 25680 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || ||| ||| Sbjct 25679 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACC 25620 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| || ||||| ||||| | ||||||||| | ||| Sbjct 25619 CAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATT 25560 Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||||| | || || ||| || || || || || || || | || || | || | Sbjct 25559 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 25501 Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083 | ||| ||| | ||| ||| ||| | | || || || | ||| || | | Sbjct 25500 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 25444 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | | || || || || || || ||||||||||| | ||| || ||||| || || Sbjct 25443 AAAGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGA 25384 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | ||||| || || | | || || || || | ||| ||||| | | || || |||| Sbjct 25383 AAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAG 25324 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | ||||| ||||||||||| ||||| || || | ||| || ||||| || |||| Sbjct 25323 AGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGA-- 25266 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || |||||| || ||||| | || || |||| || ||| || | || || | Sbjct 25265 -ACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 25207 Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || |||||| || ||||| || || ||||| | || | | Sbjct 25206 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 25152 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 |||| ||||| || || |||| || || || || |||||||| ||||||||| | Sbjct 25151 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 25092 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | | || ||||||| || || | | || ||||| || || || Sbjct 25091 CGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 25032 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || || ||||| || | | || | || ||||| | ||| | | || Sbjct 25031 GTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAG 24972 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | ||| | ||| || | |||||||||||| ||||||| || || Sbjct 24971 GGTTTCCCAGTGACGGGT--ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAG 24914 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 ||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| || Sbjct 24913 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 24855 Query 93677 C 93677 | Sbjct 24854 C 24854 >seq181537 Length=142807 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG-GGAGCGTGG 126326 ||| |||||||||||||||||||||||||||||| | |||||| || | | |||||| Sbjct 110063 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT---CTGGAAGGGCGTGG 110007 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||| || |||||| |||||| ||| ||||| Sbjct 110006 GTTCAAATCCCACAGCTGACATATTTTTATT 109976 >seq120958 Length=31870 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 9798 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 9855 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||||||| || Sbjct 9856 GCGTGGGTTCAAATCCCACTTCTGACAAATTTTT 9889 >seq186096 Length=24218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 17265 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 17322 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 17323 CGTGGGTTCAAATCCCACTTCTGACAATTT 17352 >seq187734 Length=51820 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 50111 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 50168 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| || ||||| |||||||| || Sbjct 50169 GCGTGGGTTCAAATCCCACTTCTGACAAAATA 50200 >seq33685 Length=25700 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 15554 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 15497 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15496 GCGTGGGTTCAAATCCCACTTCTGACA 15470 >seq234697 Length=154118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 124982 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 125039 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 125040 CGTGGGTTCAAATCCCACTTCTGACA 125065 >seq176443 Length=40650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 20920 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 20977 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTAT 126353 ||||||||| || ||||| ||||||| ||||| Sbjct 20978 CGTGGGTTCAAATCCCACTTCTGACAATATTAT 21010 >seq81836 Length=46253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 24634 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 24577 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| |||||| ||| || || Sbjct 24576 CGTGGGTTCAAATCCCACTTCTGACAGATTGTTTTT 24541 >seq239066 Length=34230 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 32834 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32891 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 32892 TTCAAATCCCACAGCTGTCAAA 32913 >seq200523 Length=28806 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||| | ||||| || Sbjct 24716 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGAT--CCTCGTGAGAGG 24773 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 24774 GCGTGGGTTCAAATCCCACTTCTGACA 24800 >seq173160 Length=66113 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 12224 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 12281 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 12282 GCGTGGGTTCAAATCCCACTTCTGACA 12308 >seq95032 Length=20399 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 18189 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 18246 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 18247 GCGTGGGTTCAAATCCCACTTCTGACA 18273 >seq76224 Length=143425 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 6/85 (7%) Strand=Plus/Minus Query 126267 TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----GC 126322 ||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || || Sbjct 82214 TCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGGC 82157 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 82156 GTGGGTTCAAATCCCACTTCTGACA 82132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555093337742320