Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 149 7e-31
seq181537 91.5 2e-13
seq120958 89.7 6e-13
seq186096 87.8 2e-12
seq187734 86.0 7e-12
seq33685 86.0 7e-12
seq234697 84.2 2e-11
seq176443 84.2 2e-11
seq81836 84.2 2e-11
seq239066 82.4 8e-11
seq200523 82.4 8e-11
seq173160 82.4 8e-11
seq95032 82.4 8e-11
seq76224 82.4 8e-11
>seq118536
Length=58152
Score = 149 bits (164), Expect = 7e-31
Identities = 583/901 (65%), Gaps = 28/901 (3%)
Strand=Plus/Minus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||||||| | || || || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 25739 CATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 25680
Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907
||| ||| | || | | | ||||||| || || || ||| |||
Sbjct 25679 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACC 25620
Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967
||| | | ||| ||||||||||| || ||||| ||||| | ||||||||| | |||
Sbjct 25619 CAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATT 25560
Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026
|||||| | || || ||| || || || || || || || | || || | || |
Sbjct 25559 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 25501
Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083
| ||| ||| | ||| ||| ||| | | || || || | ||| || | |
Sbjct 25500 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 25444
Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143
| | || || || || || || ||||||||||| | ||| || ||||| || ||
Sbjct 25443 AAAGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGA 25384
Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203
| ||||| || || | | || || || || | ||| ||||| | | || || ||||
Sbjct 25383 AAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAG 25324
Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263
| ||||| ||||||||||| ||||| || || | ||| || ||||| || ||||
Sbjct 25323 AGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGA-- 25266
Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323
|| |||||| || ||||| | || || |||| || ||| || | || || |
Sbjct 25265 -ACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 25207
Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378
||| || |||||| || ||||| || || ||||| | || | |
Sbjct 25206 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 25152
Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438
|||| ||||| || || |||| || || || || |||||||| ||||||||| |
Sbjct 25151 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 25092
Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498
|| || | | || ||||||| || || | | || ||||| || || ||
Sbjct 25091 CGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 25032
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558
|| || || || ||||| || | | || | || ||||| | ||| | | ||
Sbjct 25031 GTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAG 24972
Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616
| ||||| | ||| | ||| || | |||||||||||| ||||||| || ||
Sbjct 24971 GGTTTCCCAGTGACGGGT--ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAG 24914
Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676
||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| ||
Sbjct 24913 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 24855
Query 93677 C 93677
|
Sbjct 24854 C 24854
>seq181537
Length=142807
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/91 (84%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG-GGAGCGTGG 126326
||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||
Sbjct 110063 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT---CTGGAAGGGCGTGG 110007
Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357
|||| || |||||| |||||| ||| |||||
Sbjct 110006 GTTCAAATCCCACAGCTGACATATTTTTATT 109976
>seq120958
Length=31870
Score = 89.7 bits (98), Expect = 6e-13
Identities = 77/94 (82%), Gaps = 6/94 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 9798 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 9855
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||||| || ||||| |||||||||| ||
Sbjct 9856 GCGTGGGTTCAAATCCCACTTCTGACAAATTTTT 9889
>seq186096
Length=24218
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/90 (82%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 17265 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 17322
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||| || ||||| ||||||| ||
Sbjct 17323 CGTGGGTTCAAATCCCACTTCTGACAATTT 17352
>seq187734
Length=51820
Score = 86.0 bits (94), Expect = 7e-12
Identities = 75/92 (82%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 50111 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 50168
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352
|||||||||| || ||||| |||||||| ||
Sbjct 50169 GCGTGGGTTCAAATCCCACTTCTGACAAAATA 50200
>seq33685
Length=25700
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 15554 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 15497
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 15496 GCGTGGGTTCAAATCCCACTTCTGACA 15470
>seq234697
Length=154118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 124982 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 125039
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 125040 CGTGGGTTCAAATCCCACTTCTGACA 125065
>seq176443
Length=40650
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 20920 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 20977
Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTAT 126353
||||||||| || ||||| ||||||| |||||
Sbjct 20978 CGTGGGTTCAAATCCCACTTCTGACAATATTAT 21010
>seq81836
Length=46253
Score = 84.2 bits (92), Expect = 2e-11
Identities = 77/96 (80%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 24634 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 24577
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||| || ||||| |||||| ||| || ||
Sbjct 24576 CGTGGGTTCAAATCCCACTTCTGACAGATTGTTTTT 24541
>seq239066
Length=34230
Score = 82.4 bits (90), Expect = 8e-11
Identities = 68/82 (83%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 32834 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32891
Query 126328 TTCGAACCCCACACCTGACAAA 126349
||| || |||||| ||| ||||
Sbjct 32892 TTCAAATCCCACAGCTGTCAAA 32913
>seq200523
Length=28806
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||| | ||||| ||
Sbjct 24716 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGAT--CCTCGTGAGAGG 24773
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 24774 GCGTGGGTTCAAATCCCACTTCTGACA 24800
>seq173160
Length=66113
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 12224 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 12281
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 12282 GCGTGGGTTCAAATCCCACTTCTGACA 12308
>seq95032
Length=20399
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 18189 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 18246
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 18247 GCGTGGGTTCAAATCCCACTTCTGACA 18273
>seq76224
Length=143425
Score = 82.4 bits (90), Expect = 8e-11
Identities = 70/85 (82%), Gaps = 6/85 (7%)
Strand=Plus/Minus
Query 126267 TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----GC 126322
||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || ||
Sbjct 82214 TCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGGC 82157
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 82156 GTGGGTTCAAATCCCACTTCTGACA 82132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555093337742320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |