Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq28647 102 7e-17
seq196472 100 2e-16
seq179153 98.7 8e-16
seq72314 87.8 2e-12
seq188529 84.2 2e-11
seq242921 82.4 6e-11
seq198291 82.4 6e-11
>seq28647
Length=54725
Score = 102 bits (112), Expect = 7e-17
Identities = 112/148 (76%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322
||||||||| | || ||||| ||||| |||| || ||||||||| | |||||||
Sbjct 9532 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATG 9590
Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382
| || |||||| | |||||| | ||| | || |||||||| || || || ||||| |
Sbjct 9591 CTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 9650
Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGG 111410
|||| ||| | ||||||||||| |||||
Sbjct 9651 CACTCCATCTTGTGTTGCGTCTTCGCGG 9678
>seq196472
Length=12654
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
||||||||| ||||| || || |||| || ||||| || || ||||| || ||
Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
|| || ||| | || ||| |||||| || || ||||| |||| || ||
Sbjct 7759 GGACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 7818
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
||||||||| |||| ||| || || |||||||||||| ||| |||| ||||||||
Sbjct 7819 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 7878
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
||| ||||| || || || || || |||| | || || || |||||
Sbjct 7879 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 7926
>seq179153
Length=7583
Score = 98.7 bits (108), Expect = 8e-16
Identities = 113/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322
||||||||||| || ||||| ||||| |||| |||||||||||| | |||| ||
Sbjct 4677 TAAAACAAAAA-TTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTG 4619
Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382
| || |||||| | || ||| | ||| | || ||||| ||||| || || ||||| |
Sbjct 4618 CTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAATATCCAGAAGGAATCCA 4559
Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
| || ||| | ||||||||||| ||||| ||
Sbjct 4558 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528
>seq72314
Length=63918
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
||||||||| ||||| || || | || || ||||| || || ||||| || |
Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
|| | ||| | | || || |||||| || || |||||| |||| |||||
Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
|| ||||| |||| ||| || ||||||||||||||| | ||| | || || |||||
Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| ||||| || || ||||| || |||| | || || || |||||
Sbjct 55637 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 55684
>seq188529
Length=122975
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| |||||||||||||| |||| || || ||||| || ||||| ||| |
Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305
|| || ||| | | || || |||||| || |||||||| | |||| | |||||
Sbjct 109316 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 109374
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365
|| ||||| || | ||| || || || |||| ||| || | || ||||| ||
Sbjct 109375 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 109434
Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
||| ||||| ||||| ||||| || | ||| | || || || |||||
Sbjct 109435 TATCCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGTGGTGG 109482
>seq242921
Length=127737
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| ||||||||||| || | || || || ||||| || |||| ||| |
Sbjct 50019 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 50078
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | || ||| ||| ||| ||||| || || |||| |||||
Sbjct 50079 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 50138
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||||| |||| ||| || || || |||| ||| | || | || ||||||||
Sbjct 50139 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 50198
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414
|| || |||||||| || || || | ||| | ||||| || ||||||
Sbjct 50199 ATCCAGAAAGAATCCACCCTTCACCTCGTGCTTCGTCTCCGTGGTGGC 50246
>seq198291
Length=74715
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339
||||||||||| | || ||||| || ||| | |||| ||| || ||||| ||||||
Sbjct 28545 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 28604
Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389
||| | |||| |||| ||||| ||||| || |||||||| ||||| ||
Sbjct 28605 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 28654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421730849575600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |