Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq28647 102 7e-17 seq196472 100 2e-16 seq179153 98.7 8e-16 seq72314 87.8 2e-12 seq188529 84.2 2e-11 seq242921 82.4 6e-11 seq198291 82.4 6e-11 >seq28647 Length=54725 Score = 102 bits (112), Expect = 7e-17 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| || ||||||||| | ||||||| Sbjct 9532 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATG 9590 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | |||||| | ||| | || |||||||| || || || ||||| | Sbjct 9591 CTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 9650 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGG 111410 |||| ||| | ||||||||||| ||||| Sbjct 9651 CACTCCATCTTGTGTTGCGTCTTCGCGG 9678 >seq196472 Length=12654 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| || ||||| || || ||||| || || Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || ||| |||||| || || ||||| |||| || || Sbjct 7759 GGACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 7818 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||| |||| ||| || || |||||||||||| ||| |||| |||||||| Sbjct 7819 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 7878 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || || || || |||| | || || || ||||| Sbjct 7879 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 7926 >seq179153 Length=7583 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||||| || ||||| ||||| |||| |||||||||||| | |||| || Sbjct 4677 TAAAACAAAAA-TTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTG 4619 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | || ||| | ||| | || ||||| ||||| || || ||||| | Sbjct 4618 CTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAATATCCAGAAGGAATCCA 4559 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||| | ||||||||||| ||||| || Sbjct 4558 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528 >seq72314 Length=63918 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | || || ||||| || || ||||| || | Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | | || || |||||| || || |||||| |||| ||||| Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| |||| ||| || ||||||||||||||| | ||| | || || ||||| Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || ||||| || |||| | || || || ||||| Sbjct 55637 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 55684 >seq188529 Length=122975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| |||| || || ||||| || ||||| ||| | Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || || |||||| || |||||||| | |||| | ||||| Sbjct 109316 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 109374 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || |||| ||| || | || ||||| || Sbjct 109375 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 109434 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| ||||| || | ||| | || || || ||||| Sbjct 109435 TATCCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGTGGTGG 109482 >seq242921 Length=127737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || | || || || ||||| || |||| ||| | Sbjct 50019 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 50078 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||| ||| ||||| || || |||| ||||| Sbjct 50079 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 50138 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || || || |||| ||| | || | || |||||||| Sbjct 50139 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 50198 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || |||||||| || || || | ||| | ||||| || |||||| Sbjct 50199 ATCCAGAAAGAATCCACCCTTCACCTCGTGCTTCGTCTCCGTGGTGGC 50246 >seq198291 Length=74715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || ||||| || ||| | |||| ||| || ||||| |||||| Sbjct 28545 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 28604 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 28605 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 28654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421730849575600