Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq191650 91.5 3e-13 seq178539 89.7 1e-12 seq246053 87.8 4e-12 seq242486 87.8 4e-12 seq235222 87.8 4e-12 seq187734 87.8 4e-12 seq185233 87.8 4e-12 seq184451 87.8 4e-12 seq183908 87.8 4e-12 seq117048 87.8 4e-12 seq41558 87.8 4e-12 seq36724 87.8 4e-12 seq8725 87.8 4e-12 seq175672 86.0 1e-11 seq223986 84.2 4e-11 >seq191650 Length=43940 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 24245 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 24186 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 24185 CGAGCCCCAC 24176 >seq178539 Length=77810 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685 || || ||| ||||| | ||| | ||| || || | || |||||||||||||| || Sbjct 24641 GCGTTTAAGAGGAACTTTGTTAAGGAAGCAAAAGTTTCCCAATTTTCTGGTTATGTCTCT 24700 Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGG 218743 || || | || || || ||||| |||||||| ||| | |||| | ||||||| Sbjct 24701 GAGCACTCAGCTTATCACCATGGTGAACAGAGTCTTAGCA--GCACCATCATTGGCATGG 24758 Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803 ||||||||||||| |||||||| || | || | ||| || || ||||| ||||| Sbjct 24759 CACAGGACTATGTTGGCAGTAATAATGTAAATCTTTTGCAACCAAATGGTCAATTTGGCA 24818 Query 218804 CTCGT 218808 ||||| Sbjct 24819 CTCGT 24823 >seq246053 Length=63790 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 23790 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 23849 Query 142563 CCCCAC 142568 |||||| Sbjct 23850 CCCCAC 23855 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 23962 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 24021 Query 142563 CCCCAC 142568 |||||| Sbjct 24022 CCCCAC 24027 >seq242486 Length=192932 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 182471 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 182530 Query 142563 CCCCAC 142568 |||||| Sbjct 182531 CCCCAC 182536 >seq235222 Length=31885 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4739 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4680 Query 142563 CCCCAC 142568 |||||| Sbjct 4679 CCCCAC 4674 >seq187734 Length=51820 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17589 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17648 Query 142563 CCCCAC 142568 |||||| Sbjct 17649 CCCCAC 17654 >seq185233 Length=25366 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7329 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7388 Query 142563 CCCCAC 142568 |||||| Sbjct 7389 CCCCAC 7394 >seq184451 Length=13131 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2465 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2524 Query 142563 CCCCAC 142568 |||||| Sbjct 2525 CCCCAC 2530 >seq183908 Length=66567 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 51140 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 51199 Query 142563 CCCCAC 142568 |||||| Sbjct 51200 CCCCAC 51205 >seq117048 Length=259399 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 61346 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 61405 Query 142563 CCCCAC 142568 |||||| Sbjct 61406 CCCCAC 61411 >seq41558 Length=203238 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 97031 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 96972 Query 142563 CCCCAC 142568 |||||| Sbjct 96971 CCCCAC 96966 >seq36724 Length=25774 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10333 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10274 Query 142563 CCCCAC 142568 |||||| Sbjct 10273 CCCCAC 10268 >seq8725 Length=349618 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 301961 AGAT-GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 301903 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 301902 CGAGCCCCAC 301893 >seq175672 Length=179029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 29140 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 29199 Query 142564 CCCAC 142568 ||||| Sbjct 29200 CCCAC 29204 >seq223986 Length=47896 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| || Sbjct 41662 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAG 41721 Query 142563 CCCCAC 142568 |||||| Sbjct 41722 CCCCAC 41727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024492913485038