Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq72314 125 5e-24 seq196472 109 4e-19 seq146937 96.9 2e-15 seq140002 95.1 9e-15 seq179153 86.0 4e-12 seq184254 82.4 5e-11 seq182928 82.4 5e-11 >seq72314 Length=63918 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| ||||| || ||||||||||| ||||| || | | Sbjct 55001 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 55060 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||| ||||| || ||| | || | |||| Sbjct 55061 GGACACAATTGATAATGTTAAGACGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 55120 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || |||||||| || ||| |||||||| || |||| |||| ||||| || Sbjct 55121 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 55180 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| |||||||| Sbjct 55181 CATCCAGAAGGAATCCACTCTTCA 55204 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| ||||| || || ||||| || ||||| || | | Sbjct 55685 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 55744 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || ||||| ||||| | || |||| Sbjct 55745 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGAATTCCACCGGACCA 55804 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || ||||||| ||||| Sbjct 55805 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCCGACTACAA 55864 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| ||||| || ||| Sbjct 55865 TATCCAGAAGGAGTCTACGCTCCAT 55889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| || || || ||||| || || ||||| ||| | | Sbjct 54774 ATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTCG 54833 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || ||||| ||||| ||||| || ||| |||| | | ||| Sbjct 54834 GACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATACCACCAGATCAA 54893 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | |||||||| || ||||| || || ||| | ||| | || ||||||||| Sbjct 54894 CAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAAT 54953 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || || || Sbjct 54954 ATTCAGAAGGAGTCAACACTCCA 54976 >seq196472 Length=12654 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| |||||||| |||||||| || ||||| || | | Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || |||||||| ||| |||| |||| Sbjct 8443 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 8502 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| || || | || ||| | || |||| |||||||| Sbjct 8503 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 8562 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| |||||||| ||||| || ||| | || || Sbjct 8563 TATCCAGAAGGAGTCTACACTCCATCTTGTGTT 8595 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || ||||| || | | Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || ||||| |||||| || || |||||| | || | || Sbjct 7987 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 8046 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || |||||||| || ||| |||||||| | |||| |||| ||||| || Sbjct 8047 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 8106 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 8107 CATCCAGAAGGAATCCACCCTTCA 8130 >seq146937 Length=209544 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| ||||| || ||||| || ||| | ||| ||| | | Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||||| ||||| ||||| | || | |||| Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || ||| | |||||| || || | || ||||||||| Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 83575 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || |||||||| |||| | ||| | || || ||| Sbjct 83576 ATTCAGAAGGAGTCGACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGA 83623 >seq140002 Length=100703 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || ||||| ||||| | ||| || | | Sbjct 55789 ATGCAAATCTTTGTGAAAACCTTGACCGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 55848 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || ||||| ||||||| ||||| || || | ||||| || Sbjct 55849 GACACCATCGACAATGTTAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTG---AC 55905 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||| |||||||| || || || || ||| || || | || |||||| Sbjct 55906 CAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACACTAGCTGATTAC 55965 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||| || || ||| |||| Sbjct 55966 AACATCCAGAAGGAATCAACCCTCCATTTGGT 55997 >seq179153 Length=7583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||| | || || || |||||||| | || || | | Sbjct 4755 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4696 Query 21894 GAAACGGTGGCCGA-TCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | |||| ||||||| || || || || | ||| | | || Sbjct 4695 GACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCA 4636 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || | || |||||||| |||||||| || ||| ||| | || |||||||| Sbjct 4635 ACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAA 4576 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 ||| ||||||||||| ||||| ||| | || || ||| | || ||||| ||| Sbjct 4575 TATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTAT 4524 >seq184254 Length=183585 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| || ||||| | || |||||||| || |||||||| ||||| | ||| Sbjct 180576 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 180635 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || |||| ||||||||||||||||| ||||| |||||||| Sbjct 180636 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCA 180685 >seq182928 Length=15200 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || || || ||||| | || || | || Sbjct 4380 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 4439 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || ||||| |||||| | ||| | ||| Sbjct 4440 GACACCATTGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 4499 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||||||||| ||||| |||||| | |||| | || || ||||| Sbjct 4500 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATAGTAGAACTCTTGCTGACTACAAC 4559 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || ||||| Sbjct 4560 ATCCAGAAGGAGTCCACCCTTCA 4582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357016537816972