Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq118536 141 2e-28 >seq118536 Length=58152 Score = 141 bits (156), Expect = 2e-28 Identities = 304/446 (68%), Gaps = 15/446 (3%) Strand=Plus/Plus Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 |||| | |||| ||| || | || ||||| ||||||||||| |||||||| || Sbjct 24984 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTA 25043 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTT--TGAGGCGCGCTGC-TTC 42515 || ||||| ||| |||||||||||||| || || | || |||||||| ||| ||| Sbjct 25044 GAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCGCG-TGCTTTC 25100 Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574 ||||||||||| || || || || ||| | ||||| ||| |||| || |||| || | Sbjct 25101 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 25157 Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | |||||||| ||| | | ||| | | | | ||| || | ||||| || Sbjct 25158 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 25217 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||||||| | ||||| || |||||||| || |||| ||| Sbjct 25218 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGA---AACA 25274 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| | |||| |||||| | || || || || || ||||| || |||| Sbjct 25275 TTTGCGGAGCGTTTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTC 25334 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | || |||||| | || || || || ||||| ||| | || ||||||||||| Sbjct 25335 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAG 25394 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCA 42838 | || |||||||| || |||| Sbjct 25395 TTAATTTCAAGGGACGAAGGTTTGCA 25420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941341890987680