Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq178615 93.3 4e-14 seq238297 89.7 5e-13 >seq178615 Length=36453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| ||||||||||| || || Sbjct 8447 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCAATGTTAAATGGCAC 8388 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 8387 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 8328 Query 20359 ATAAAATTG 20367 |||||| || Sbjct 8327 ATAAAACTG 8319 >seq238297 Length=50983 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | || ||| ||||||||||| || || Sbjct 25139 ACCAGAAACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCAC 25198 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| |||| ||||| Sbjct 25199 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCGTTGGCTAC 25258 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 25259 ATAGAACTG 25267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439971893767120