Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq196811 104 2e-17 seq168923 96.9 3e-15 seq188529 89.7 4e-13 seq157592 86.0 5e-12 seq222647 84.2 2e-11 >seq196811 Length=2382 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1263 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1264 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1294 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1263 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1264 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1294 >seq168923 Length=671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/98 (85%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 114329 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTA 114384 |||| |||||||| |||||||||||||||| ||||||||||||| || | || |||||| Sbjct 86 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTGGATACGATCTA 144 Query 114385 AGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||| |||||||||| |||||| || | ||| || Sbjct 145 AGAAACCATAACTGATATAATGAGCCTTTTGCGGTTTC 182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/98 (85%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 115526 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTA 115581 |||| |||||||| |||||||||||||||| ||||||||||||| || | || |||||| Sbjct 86 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATTGTGGATACGATCTA 144 Query 115582 AGGAACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||| |||||||||| |||||| || | ||| || Sbjct 145 AGAAACCATAACTGATATAATGAGCCTTTTGCGGTTTC 182 >seq188529 Length=122975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 109255 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 109197 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| |||| | | || || | |||||| || |||||||||| |||||||| || | Sbjct 109196 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGG 109137 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | || ||||| |||||| ||| | | | ||| | | | | | || | Sbjct 109136 GAATTCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTA-TCA-ATTGTGTCTGAACTCTC 109079 Query 34079 A--TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| || || |||||||| || ||||| || ||||| || ||||| Sbjct 109078 AACCTCGAGAGTAATGGTTTTTCCAGTGAGTGTCTTTACAAATATCTGCAT 109028 >seq157592 Length=32097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| |||||||| || || ||| |||||||||||||||||| || | | Sbjct 24197 CCTCCCCTCAGCCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 24255 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || ||||| ||||| | |||||| || Sbjct 24256 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTC 24309 >seq222647 Length=37102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| |||||||| || ||||||||| | ||||||||| || | ||| Sbjct 27465 AGACGGAGCACGAGATGAAGAGTCGACTCCTTCTGGAGGTTGTAATCGGCTAGGGTTCGG 27524 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||||| |||| ||||| ||||| || ||||| ||||||||||| Sbjct 27525 TCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATC 27568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395833640522236