Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17735 87.8 2e-12 seq208208 84.2 3e-11 >seq17735 Length=8370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 10/163 (6%) Strand=Plus/Plus Query 30460 CACTTTGCCGCACAAAGTCATGTGGACAACTCATTTATAAGTCCACTTGGTTTCACATTA 30519 || ||||| ||||| | ||||||||| || |||||| || | || ||| |||||| | Sbjct 5109 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 5168 Query 30520 GATAATACGTATGGAACACACGCACTTGTTGAAATGTGTAGAAGGCATACACCAAATGTA 30579 |||||| ||||| ||||| | |||| ||||| |||| || | || |||| || Sbjct 5169 AATAATATTTATGGTACACATGTACTTCTTGAAGCTTGTA--AG---TTGACTAAATCTA 5223 Query 30580 ----GAG-TTCATACATTTTAGTACAGATGAAGTATACGGCGA 30617 ||| ||||| ||| |||||||||||||||| || || || Sbjct 5224 TCAAGAGATTCATTCATGTTAGTACAGATGAAGTTTATGGTGA 5266 >seq208208 Length=133897 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 37809 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 37750 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | || | || || || | || || |||||||| || ||||| ||||| || | Sbjct 37749 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCCGTCAATAGTTGGTTCAG 37690 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 10966 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 37689 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 37632 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTT-CACGGGCAACTTCAAAGAT 11025 || ||||||||||| | || || || || || ||||| | || | ||| ||| | Sbjct 37631 GCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 37573 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 ||| ||||||| ||| || ||||| |||||||| || ||||| | | | ||| | Sbjct 37572 ATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 37514 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 ||| || || || || | |||||| || || || || || ||||| ||||| | Sbjct 37513 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAG 37454 Query 11145 TCCCAGG 11151 | ||||| Sbjct 37453 TACCAGG 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595457614607440