Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 118 1e-21
seq242921 102 8e-17
seq140002 98.7 1e-15
seq179153 87.8 2e-12
seq232054 86.0 6e-12
seq182928 84.2 2e-11
seq175354 84.2 2e-11
seq72314 84.2 2e-11
>seq196472
Length=12654
Score = 118 bits (130), Expect = 1e-21
Identities = 146/197 (74%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||||||||| || | ||| || |||||||||||||| || |
Sbjct 7667 TTGACTCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTG 7608
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| |||| | ||| ||||| || || || |||||||||||||| |||||| ||| |
Sbjct 7607 CAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAA 7548
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | ||||| | ||| || |||| || | || || ||||| |||||
Sbjct 7547 CATTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTC 7489
Query 138598 TTTACAAAAATCTGCAT 138614
|||||||| ||||||||
Sbjct 7488 TTTACAAAGATCTGCAT 7472
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||||||||| || || || || ||| ||| || || | ||| || || |
Sbjct 7895 TTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAG 7836
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| | || || | ||||||||||| || |||||||| || || ||| |||| | ||||
Sbjct 7835 CAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATC-TTGAATTTTCGCTTTA 7777
Query 138539 A-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
| | || | ||||| || ||| || || | || | ||||| ||||||| ||
Sbjct 7776 ACGTTATCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTC 7717
Query 138598 TTTACAAAAATCTGCAT 138614
|| ||||| || |||||
Sbjct 7716 TTAACAAATATTTGCAT 7700
>seq242921
Length=127737
Score = 102 bits (112), Expect = 8e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || | || | | | |||||||| || |||||||||||
Sbjct 49562 GCCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 49503
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || |||||||| || ||||| | | | || | | ||| || || |||||
Sbjct 49502 AAGAGTTCGTCCATCCTCGAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGAGG 49443
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| ||| || | ||||| | | |||||||| ||| |
Sbjct 49442 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGT-CAATGGTGTCGGAGCTCTCAA 49384
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | || || ||||||| |||||| |||||||||||||||
Sbjct 49383 CCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAAATCTGCATG 49334
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || | || | | | || ||||| |||||||||||||||
Sbjct 49334 GCCACCACGCAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGC 49275
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || || ||||| | | | || | | ||| ||||| |||||
Sbjct 49274 AAGAGTTCGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 49215
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| || || | |||| || | |||||| | ||| |
Sbjct 49214 GATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTG-TCAATGGTGTCAGAGCTCTCAA 49156
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | || || ||||||| |||||| ||||| |||||||||
Sbjct 49155 CCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATG 49106
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||||||| | || | || | | |||||||| ||||||||||||||
Sbjct 49790 GCCACCGCGCAAACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGC 49731
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || || || || | | |||| || | ||| || || |||||
Sbjct 49730 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 49671
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| || || ||| | || | || | | || | ||||||| ||| |
Sbjct 49670 GATTCCTTCCTTATC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAA 49612
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||||| || | || || ||||| || || ||||||||||| ||||||
Sbjct 49611 CCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATG 49562
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || | || | | | ||||||||||| ||||||||||||
Sbjct 49106 GCCACCGCGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 49047
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || || || || | | |||| | | ||| || || |||||
Sbjct 49046 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 48987
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | ||||||| ||| ||
Sbjct 48986 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 48927
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | ||||| || || || || |||||||| || |||||
Sbjct 48926 CTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTTTACAAAGATTTGCAT 48879
>seq140002
Length=100703
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | ||| | || | | | ||||||||||| |||||||||||
Sbjct 55559 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 55500
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| ||||| || || | | |||| | | || || ||||||||
Sbjct 55499 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 55440
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| | |||| |||| | || | ||||| | ||| ||
Sbjct 55439 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 55381
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || || || || | |||||||||||| ||||||||
Sbjct 55380 CTCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 55333
>seq179153
Length=7583
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/229 (69%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | ||| | | || ||||| || || ||||| ||
Sbjct 4528 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4587
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||||||||| || | | | |||| | ||||| || |||||
Sbjct 4588 AGTGTTCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGA 4647
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| ||||||||||| ||| || | |||||| | ||| |
Sbjct 4648 ATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTCAA 4706
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || || || || || || ||||| || |||||
Sbjct 4707 CCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4755
>seq232054
Length=109336
Score = 86.0 bits (94), Expect = 6e-12
Identities = 141/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
|||||||| || ||||||||||| ||| | || || ||||| || || ||||| |
Sbjct 62191 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGGCCATCCTCAAGCTGCTTACCTGC 62133
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538
| || | ||||| |||||||| || || ||||| ||||| ||| | || | |||
Sbjct 62132 GAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTAA 62074
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | |||||| | ||||| ||||| | || | || ||||| ||||| ||
Sbjct 62073 CATTG-TCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTC 62015
Query 138598 TTTACAAAAATCTGCAT 138614
|| || || ||||||||
Sbjct 62014 TTCACGAATATCTGCAT 61998
>seq182928
Length=15200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/200 (71%), Gaps = 7/200 (4%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
||||||| || ||||||||||| || ||| | | | | |||||| ||||| || || |
Sbjct 4802 TTGACTCTTTCTGAATGTTGTAATCTGTCA-ATTCCTCCCGTCCTCAAGTTGCTTCCCAG 4744
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| |||| || | ||| ||||| ||||| |||||||| ||||| ||| ||| ||| |
Sbjct 4743 CAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTAA 4684
Query 138539 -ATTGTTCCACGGTGTCGGTCGAC--TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595
|||| || | ||| || | || || || || | || | || || || || || |
Sbjct 4683 CATTG-TCGATGGTATC--TTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCG 4627
Query 138596 TTTTTACAAAAATCTGCATG 138615
| || ||||| |||||||||
Sbjct 4626 TCTTGACAAAGATCTGCATG 4607
>seq175354
Length=42077
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
||||||| || ||||||||||| || || || | | |||||| ||||| || || |
Sbjct 17508 TTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCAG 17567
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| |||| || | || ||||| ||||| |||||||| ||||| |||| ||| ||| |
Sbjct 17568 CAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTAA 17627
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | ||| || | || || || | || | || || || || || ||
Sbjct 17628 CATTG-TCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686
Query 138598 TTTACAAAAATCTGCATG 138615
|| ||||| |||||||||
Sbjct 17687 TTGACAAAGATCTGCATG 17704
>seq72314
Length=63918
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| ||||| ||||| || | ||| || |||||||| ||||| || |
Sbjct 54969 TTGACTCCTTCTGAATATTGTAATCCGCGAGAGTCCGTCCATCCTCGAGCTGTTTTCCTG 54910
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| |||| | ||| ||||| || || ||||||||||| || || |||||| || |
Sbjct 54909 CAAAGATCAAACGTTGTTGATCTGGTGGTATACCTTCCTTATCTTGGATTTTGGCCTTAA 54850
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | ||||| | || || || | || | ||||| ||||||| ||||
Sbjct 54849 CATTATCAATCGTGTCCGAGCTTTCGACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTT 54790
Query 138599 TTACAAAAATCTGCAT 138614
| |||||||| |||||
Sbjct 54789 TAACAAAAATTTGCAT 54774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494687275548960
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