Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq196472 118 1e-21 seq242921 102 8e-17 seq140002 98.7 1e-15 seq179153 87.8 2e-12 seq232054 86.0 6e-12 seq182928 84.2 2e-11 seq175354 84.2 2e-11 seq72314 84.2 2e-11 >seq196472 Length=12654 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||||||||| || | ||| || |||||||||||||| || | Sbjct 7667 TTGACTCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTG 7608 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| ||||| || || || |||||||||||||| |||||| ||| | Sbjct 7607 CAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAA 7548 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||||| | ||| || |||| || | || || ||||| ||||| Sbjct 7547 CATTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTC 7489 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| |||||||| Sbjct 7488 TTTACAAAGATCTGCAT 7472 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| || || || || ||| ||| || || | ||| || || | Sbjct 7895 TTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAG 7836 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || || | ||||||||||| || |||||||| || || ||| |||| | |||| Sbjct 7835 CAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATC-TTGAATTTTCGCTTTA 7777 Query 138539 A-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| || ||| || || | || | ||||| ||||||| || Sbjct 7776 ACGTTATCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTC 7717 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 7716 TTAACAAATATTTGCAT 7700 >seq242921 Length=127737 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 49562 GCCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 49503 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||||| || ||||| | | | || | | ||| || || ||||| Sbjct 49502 AAGAGTTCGTCCATCCTCGAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGAGG 49443 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| ||| || | ||||| | | |||||||| ||| | Sbjct 49442 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGT-CAATGGTGTCGGAGCTCTCAA 49384 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| |||||| ||||||||||||||| Sbjct 49383 CCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAAATCTGCATG 49334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | || ||||| ||||||||||||||| Sbjct 49334 GCCACCACGCAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGC 49275 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || || ||||| | | | || | | ||| ||||| ||||| Sbjct 49274 AAGAGTTCGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 49215 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || || | |||| || | |||||| | ||| | Sbjct 49214 GATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTG-TCAATGGTGTCAGAGCTCTCAA 49156 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| |||||| ||||| ||||||||| Sbjct 49155 CCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATG 49106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| | || | || | | |||||||| |||||||||||||| Sbjct 49790 GCCACCGCGCAAACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGC 49731 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || || || || | | |||| || | ||| || || ||||| Sbjct 49730 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 49671 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | || | || | | || | ||||||| ||| | Sbjct 49670 GATTCCTTCCTTATC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAA 49612 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || ||||| || || ||||||||||| |||||| Sbjct 49611 CCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATG 49562 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | ||||||||||| |||||||||||| Sbjct 49106 GCCACCGCGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 49047 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || || || || | | |||| | | ||| || || ||||| Sbjct 49046 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 48987 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 48986 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 48927 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||| || || || || |||||||| || ||||| Sbjct 48926 CTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTTTACAAAGATTTGCAT 48879 >seq140002 Length=100703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 55559 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 55500 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || || | | |||| | | || || |||||||| Sbjct 55499 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 55440 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | ||||| | ||| || Sbjct 55439 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 55381 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || | |||||||||||| |||||||| Sbjct 55380 CTCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 55333 >seq179153 Length=7583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | || ||||| || || ||||| || Sbjct 4528 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4587 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||||| || | | | |||| | ||||| || ||||| Sbjct 4588 AGTGTTCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGA 4647 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| ||||||||||| ||| || | |||||| | ||| | Sbjct 4648 ATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTCAA 4706 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || || || ||||| || ||||| Sbjct 4707 CCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4755 >seq232054 Length=109336 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || ||||| || || ||||| | Sbjct 62191 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGGCCATCCTCAAGCTGCTTACCTGC 62133 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| |||||||| || || ||||| ||||| ||| | || | ||| Sbjct 62132 GAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTAA 62074 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || ||||| ||||| || Sbjct 62073 CATTG-TCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTC 62015 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 62014 TTCACGAATATCTGCAT 61998 >seq182928 Length=15200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || ||||||||||| || ||| | | | | |||||| ||||| || || | Sbjct 4802 TTGACTCTTTCTGAATGTTGTAATCTGTCA-ATTCCTCCCGTCCTCAAGTTGCTTCCCAG 4744 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | ||| ||||| ||||| |||||||| ||||| ||| ||| ||| | Sbjct 4743 CAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTAA 4684 Query 138539 -ATTGTTCCACGGTGTCGGTCGAC--TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 |||| || | ||| || | || || || || | || | || || || || || | Sbjct 4683 CATTG-TCGATGGTATC--TTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCG 4627 Query 138596 TTTTTACAAAAATCTGCATG 138615 | || ||||| ||||||||| Sbjct 4626 TCTTGACAAAGATCTGCATG 4607 >seq175354 Length=42077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || ||||||||||| || || || | | |||||| ||||| || || | Sbjct 17508 TTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCAG 17567 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | || ||||| ||||| |||||||| ||||| |||| ||| ||| | Sbjct 17568 CAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTAA 17627 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||| || | || || || | || | || || || || || || Sbjct 17628 CATTG-TCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| ||||||||| Sbjct 17687 TTGACAAAGATCTGCATG 17704 >seq72314 Length=63918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||| ||||| || | ||| || |||||||| ||||| || | Sbjct 54969 TTGACTCCTTCTGAATATTGTAATCCGCGAGAGTCCGTCCATCCTCGAGCTGTTTTCCTG 54910 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| ||||| || || ||||||||||| || || |||||| || | Sbjct 54909 CAAAGATCAAACGTTGTTGATCTGGTGGTATACCTTCCTTATCTTGGATTTTGGCCTTAA 54850 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | || || || | || | ||||| ||||||| |||| Sbjct 54849 CATTATCAATCGTGTCCGAGCTTTCGACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTT 54790 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 54789 TAACAAAAATTTGCAT 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494687275548960