Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq208208 84.2 3e-11 >seq208208 Length=133897 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 37809 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 37750 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | || | || || || | ||||| |||||||| || ||||| ||||| || | Sbjct 37749 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCCGTCAATAGTTGGTTCAG 37690 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 12881 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 37689 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 37632 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGAT 12940 || |||||||| |||| || || || || || |||||| ||| ||| ||| | Sbjct 37631 GCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 37573 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000 ||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| | Sbjct 37572 ATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 37514 Query 13001 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 ||| || || || || | |||||| || || || || || ||||| ||||| | Sbjct 37513 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAG 37454 Query 13060 TCCCTGG 13066 | || || Sbjct 37453 TACCAGG 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611559943484880