Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq224189 123 3e-23
seq242921 114 1e-20
seq24881 107 2e-18
seq146937 105 8e-18
seq157592 98.7 1e-15
seq196472 95.1 1e-14
seq232054 93.3 5e-14
seq72314 91.5 2e-13
seq140002 86.0 7e-12
seq182928 82.4 9e-11
>seq224189
Length=50442
Score = 123 bits (136), Expect = 3e-23
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||| | || |||||| ||||| ||||| || | |||||| || |
Sbjct 16412 ACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACC 16471
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| |||||||| || |||||||| || | ||||||||||| | || | || |||||
Sbjct 16472 ATCCTCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTT 16531
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||| | ||| | | | |||||| ||||| || || | ||||
Sbjct 16532 GTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGA 16590
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 16591 TGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 16630
>seq242921
Length=127737
Score = 114 bits (126), Expect = 1e-20
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| |||||||||| |||||||| | || || |||||||| || || ||
Sbjct 49070 CTCCTTTTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAA 49011
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | |||||| |||| || | | ||||||||| |||||| ||||| |
Sbjct 49010 GATCAACCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 48951
Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | |||||| ||| || || || | || |||||||| || || ||||| ||
Sbjct 48950 ATCAATAGTGTCGGAACTC---TCAACCTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTT 48894
Query 46579 AACAAAGATTTGCAT 46593
||||||||||||||
Sbjct 48893 TACAAAGATTTGCAT 48879
Score = 96.9 bits (106), Expect = 4e-15
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||||| || | || ||||||||||| || || ||
Sbjct 49526 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCCTCGAGCTGCTTACCAGCAAA 49467
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | |||||| || | || | || ||||||||| |||||| ||||| |
Sbjct 49466 AATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 49407
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || || | |||||||| || || |||| |||||
Sbjct 49406 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTT 49350
Query 46579 AACAAAGATTTGCAT 46593
||||| || |||||
Sbjct 49349 CACAAAAATCTGCAT 49335
>seq24881
Length=242481
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||| | || |||||| | ||| ||||| || | |||||| || |
Sbjct 141199 ACGGAGCACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACC 141140
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||| || |||||||| || | ||||||||||| | || | || |||||
Sbjct 141139 ATCCTCAAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTT 141080
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | | | | |||||| ||||| || || | || ||
Sbjct 141079 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAAT 141020
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 141019 GGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 140981
>seq146937
Length=209544
Score = 105 bits (116), Expect = 8e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| || | ||| || | |||| ||||| ||||| ||||||||
Sbjct 83358 TCCTTCTGGATGTTGTAATCAGCTAGGGTTCTGCCGTCTTCGAGTTGCTTTCCGGCGAAA 83299
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | |||||||| | || | | |||||||||| ||||| ||| | |||
Sbjct 83298 ATCAACCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTAA-CGTT 83240
Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| ||| || || | ||||| ||||| || || || ||||||||
Sbjct 83239 GTCGATAGTGTCGGAGCTTTCGACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTAAC 83180
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 83179 AAAGATTTGCAT 83168
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| ||| || | |||| ||||||||||| ||||||||
Sbjct 83130 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCTTCGAGCTGCTTTCCGGCGAAG 83071
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | ||||||||| | || | | || |||||| ||||| ||| | |||
Sbjct 83070 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGAATCTTAGCCTT-AACGTT 83012
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| ||| || || | ||||| ||||| || || || ||||| ||
Sbjct 83011 GTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTTCCGGTTAGGGTTTTCAC 82952
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 82951 GAAGATCTGCAT 82940
Score = 82.4 bits (90), Expect = 9e-11
Identities = 153/221 (69%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| || ||||| || |||||| ||||| ||||| || | || || || |
Sbjct 83839 ACGAAGCACAAGGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCC 83780
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || | |||||| || || || |||| | ||||| || | || | | ||||||
Sbjct 83779 ATCTTCCAACTGCTTACCAGCAAAGATCAGCCTTTGCTGATCTGGTGGGATACCCTCCTT 83720
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCCACCG 46553
||| ||||||| ||| | ||| | | | ||||| ||| |||||| || | |
Sbjct 83719 ATCCTGGATCTTCGCCTTAA-CGTTGTCGATAGTGTCAGAGCT---TTCCACCTCAAGAG 83664
Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||||||||| || |||| || || ||||| || ||||||
Sbjct 83663 TGATGGTTTTCCCGGTCAAAGTCTTGACAAAAATCTGCATT 83623
>seq157592
Length=32097
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| || | ||| || || | || |||||||||||||| ||||||
Sbjct 24461 TCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAT 24520
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | ||||||||| | || | || |||||| ||| || || ||||| |
Sbjct 24521 ATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATTTTGGCCTTGACATTG 24580
Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | ||||| ||| || || || | |||||||| ||||| || || |||||
Sbjct 24581 TCGATGGTGTCAGAACTC---TCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTG 24637
Query 46580 ACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 24638 ACGAAGATCTGCAT 24651
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| |||| || || || | || ||||||||||||||||||||
Sbjct 24688 CTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 24747
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | ||||||||| | || | | |||||| ||| || || ||||| |
Sbjct 24748 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTATCCTGAATTTTGGCCTTGACATT 24807
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| ||| || || | ||||| |||||||| || || ||||| ||
Sbjct 24808 ATCAATGGTGTCAGAACTTTCGACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTTTTGAC 24867
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 24868 GAAGATCTGCAT 24879
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/198 (71%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || |||||||||||||| | | || | | || ||||||||||| || || ||
Sbjct 24004 CTCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAA 24063
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519
||||| | ||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 24064 GATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATT 24123
Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
|||| | ||||| |||| ||||| |||| |||||||| || || |||| ||
Sbjct 24124 GTCG--ATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCAGTCAATGTC 24178
Query 46577 TTAACAAAGATTTGCATT 46594
|| || ||||| ||||||
Sbjct 24179 TTCACGAAGATCTGCATT 24196
>seq196472
Length=12654
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/217 (70%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | |||| |||||| ||||||||||| || | || || | | ||
Sbjct 8596 CAACACAAGATGGAGTGTAGACTCCTTCTGGATATTGTAATCAGCCAGGGTCCTACCATC 8537
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | |||||| || || || || | | ||||||||| | || | | || || ||
Sbjct 8536 CTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGTATACCTTCTTTATC 8477
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557
| |||||| ||| | | | | |||||| |||| || || |||| |||||
Sbjct 8476 CTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCAACTTCCAATGTGAT 8420
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||||| ||||| | |||||||| ||||||||||||
Sbjct 8419 GGTTTTTCCCGTTAAGGTTTTAACGAAGATTTGCATT 8383
>seq232054
Length=109336
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/198 (71%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||| || || | || || |||||||| || |||||
Sbjct 62189 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTGCTTACCTGCGAA 62130
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || ||||||||| ||||| ||| | |
Sbjct 62129 AATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATT 62070
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | || || || || |||||||| || || ||
Sbjct 62069 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTCTTCAC 62010
Query 46582 AAAGATTTGCAT-TTTGC 46598
|| || ||||| |||||
Sbjct 62009 GAATATCTGCATCTTTGC 61992
>seq72314
Length=63918
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/217 (70%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| ||| ||||| | ||| |||||| |||||||||||||||| || || | | ||
Sbjct 55898 CAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGCCAGTGTCCTACCATC 55839
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||| || || || || || | | ||||||||| | || | | |||||| ||
Sbjct 55838 CTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATTCCCTCCTTATC 55779
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557
| |||||| ||| | | | | |||||| |||| || || |||| |||||
Sbjct 55778 CTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCAACTTCCAGTGTGAT 55722
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
||| || || || | |||||||| ||||||||||||
Sbjct 55721 GGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCATT 55685
>seq140002
Length=100703
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/194 (70%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||||||||||||||||| ||||| || | || || | |||||| || || ||
Sbjct 55295 TCCTTTTGGATATTGTAGTCGGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAG 55236
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | ||||| || | || | | ||||| || |||||| ||| | |
Sbjct 55235 ATCAACCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTG 55176
Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | ||||| ||| || || || | |||||||||||||| || || || ||
Sbjct 55175 TCGATAGTGTCTGAACTC---TCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTCTTT 55119
Query 46580 ACAAAGATTTGCAT 46593
||||||||||||||
Sbjct 55118 ACAAAGATTTGCAT 55105
>seq182928
Length=15200
Score = 82.4 bits (90), Expect = 9e-11
Identities = 136/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||||| | || || || |||||||| || ||
Sbjct 4571 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACTATCTTCAAGTTGCTTGCCAGCAAA 4512
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | || || || | || | | |||||| ||| |||||| ||||| |
Sbjct 4511 AATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTGACATT 4452
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || || | ||| || || || || ||||| |||||
Sbjct 4451 GTCAATGGTGTCTGAGCTC---TCGACCTCAAGCGTAATAGTCTTTCCGGTCAGAGTTTT 4395
Query 46579 AACAAAGATTTGCAT 46593
|||||||||||||||
Sbjct 4394 AACAAAGATTTGCAT 4380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563444347449360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |