Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq224189 123 3e-23 seq242921 114 1e-20 seq24881 107 2e-18 seq146937 105 8e-18 seq157592 98.7 1e-15 seq196472 95.1 1e-14 seq232054 93.3 5e-14 seq72314 91.5 2e-13 seq140002 86.0 7e-12 seq182928 82.4 9e-11 >seq224189 Length=50442 Score = 123 bits (136), Expect = 3e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | || |||||| ||||| ||||| || | |||||| || | Sbjct 16412 ACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACC 16471 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || |||||||| || | ||||||||||| | || | || ||||| Sbjct 16472 ATCCTCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTT 16531 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||| | ||| | | | |||||| ||||| || || | |||| Sbjct 16532 GTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGA 16590 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| || |||||||| ||||| || ||||| ||||| || Sbjct 16591 TGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 16630 >seq242921 Length=127737 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 49070 CTCCTTTTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAA 49011 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| |||| || | | ||||||||| |||||| ||||| | Sbjct 49010 GATCAACCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 48951 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| || || || | || |||||||| || || ||||| || Sbjct 48950 ATCAATAGTGTCGGAACTC---TCAACCTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTT 48894 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 48893 TACAAAGATTTGCAT 48879 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| || | || ||||||||||| || || || Sbjct 49526 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCCTCGAGCTGCTTACCAGCAAA 49467 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | || ||||||||| |||||| ||||| | Sbjct 49466 AATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 49407 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| || || |||| ||||| Sbjct 49406 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTT 49350 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 49349 CACAAAAATCTGCAT 49335 >seq24881 Length=242481 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | || |||||| | ||| ||||| || | |||||| || | Sbjct 141199 ACGGAGCACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACC 141140 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || |||||||| || | ||||||||||| | || | || ||||| Sbjct 141139 ATCCTCAAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTT 141080 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | |||||| ||||| || || | || || Sbjct 141079 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAAT 141020 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| || |||||||| ||||| || ||||| ||||| || Sbjct 141019 GGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 140981 >seq146937 Length=209544 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | ||| || | |||| ||||| ||||| |||||||| Sbjct 83358 TCCTTCTGGATGTTGTAATCAGCTAGGGTTCTGCCGTCTTCGAGTTGCTTTCCGGCGAAA 83299 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||||| | || | | |||||||||| ||||| ||| | ||| Sbjct 83298 ATCAACCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTAA-CGTT 83240 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||| || || | ||||| ||||| || || || |||||||| Sbjct 83239 GTCGATAGTGTCGGAGCTTTCGACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTAAC 83180 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 83179 AAAGATTTGCAT 83168 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 83130 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCTTCGAGCTGCTTTCCGGCGAAG 83071 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | || |||||| ||||| ||| | ||| Sbjct 83070 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGAATCTTAGCCTT-AACGTT 83012 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||| || || | ||||| ||||| || || || ||||| || Sbjct 83011 GTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTTCCGGTTAGGGTTTTCAC 82952 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 82951 GAAGATCTGCAT 82940 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || ||||| || |||||| ||||| ||||| || | || || || | Sbjct 83839 ACGAAGCACAAGGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCC 83780 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| || || || |||| | ||||| || | || | | |||||| Sbjct 83779 ATCTTCCAACTGCTTACCAGCAAAGATCAGCCTTTGCTGATCTGGTGGGATACCCTCCTT 83720 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| ||||||| ||| | ||| | | | ||||| ||| |||||| || | | Sbjct 83719 ATCCTGGATCTTCGCCTTAA-CGTTGTCGATAGTGTCAGAGCT---TTCCACCTCAAGAG 83664 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||||||| || |||| || || ||||| || |||||| Sbjct 83663 TGATGGTTTTCCCGGTCAAAGTCTTGACAAAAATCTGCATT 83623 >seq157592 Length=32097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | ||| || || | || |||||||||||||| |||||| Sbjct 24461 TCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAT 24520 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||| ||| || || ||||| | Sbjct 24521 ATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATTTTGGCCTTGACATTG 24580 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 24581 TCGATGGTGTCAGAACTC---TCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTG 24637 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 24638 ACGAAGATCTGCAT 24651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || || || | || |||||||||||||||||||| Sbjct 24688 CTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 24747 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||| ||| || || ||||| | Sbjct 24748 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTATCCTGAATTTTGGCCTTGACATT 24807 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || | ||||| |||||||| || || ||||| || Sbjct 24808 ATCAATGGTGTCAGAACTTTCGACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTTTTGAC 24867 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 24868 GAAGATCTGCAT 24879 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| | | || | | || ||||||||||| || || || Sbjct 24004 CTCTTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAA 24063 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 24064 GATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTTACATT 24123 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| |||| ||||| |||| |||||||| || || |||| || Sbjct 24124 GTCG--ATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCAGTCAATGTC 24178 Query 46577 TTAACAAAGATTTGCATT 46594 || || ||||| |||||| Sbjct 24179 TTCACGAAGATCTGCATT 24196 >seq196472 Length=12654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | |||| |||||| ||||||||||| || | || || | | || Sbjct 8596 CAACACAAGATGGAGTGTAGACTCCTTCTGGATATTGTAATCAGCCAGGGTCCTACCATC 8537 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | |||||| || || || || | | ||||||||| | || | | || || || Sbjct 8536 CTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGTATACCTTCTTTATC 8477 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557 | |||||| ||| | | | | |||||| |||| || || |||| ||||| Sbjct 8476 CTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCAACTTCCAATGTGAT 8420 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||| ||||| | |||||||| |||||||||||| Sbjct 8419 GGTTTTTCCCGTTAAGGTTTTAACGAAGATTTGCATT 8383 >seq232054 Length=109336 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || || |||||||| || ||||| Sbjct 62189 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTGCTTACCTGCGAA 62130 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || ||||||||| ||||| ||| | | Sbjct 62129 AATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATT 62070 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || || |||||||| || || || Sbjct 62069 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTCTTCAC 62010 Query 46582 AAAGATTTGCAT-TTTGC 46598 || || ||||| ||||| Sbjct 62009 GAATATCTGCATCTTTGC 61992 >seq72314 Length=63918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||| ||||| | ||| |||||| |||||||||||||||| || || | | || Sbjct 55898 CAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGCCAGTGTCCTACCATC 55839 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||| || || || || || | | ||||||||| | || | | |||||| || Sbjct 55838 CTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATTCCCTCCTTATC 55779 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557 | |||||| ||| | | | | |||||| |||| || || |||| ||||| Sbjct 55778 CTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTC---TCAACTTCCAGTGTGAT 55722 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || | |||||||| |||||||||||| Sbjct 55721 GGTCTTTCCTGTTAAAGTTTTAACGAAGATTTGCATT 55685 >seq140002 Length=100703 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||||| ||||| || | || || | |||||| || || || Sbjct 55295 TCCTTTTGGATATTGTAGTCGGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAG 55236 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||| || | || | | ||||| || |||||| ||| | | Sbjct 55235 ATCAACCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTG 55176 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| || || || | |||||||||||||| || || || || Sbjct 55175 TCGATAGTGTCTGAACTC---TCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTCTTT 55119 Query 46580 ACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 55118 ACAAAGATTTGCAT 55105 >seq182928 Length=15200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| | || || || |||||||| || || Sbjct 4571 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACTATCTTCAAGTTGCTTGCCAGCAAA 4512 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || || || | || | | |||||| ||| |||||| ||||| | Sbjct 4511 AATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTGACATT 4452 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | ||| || || || || ||||| ||||| Sbjct 4451 GTCAATGGTGTCTGAGCTC---TCGACCTCAAGCGTAATAGTCTTTCCGGTCAGAGTTTT 4395 Query 46579 AACAAAGATTTGCAT 46593 ||||||||||||||| Sbjct 4394 AACAAAGATTTGCAT 4380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563444347449360