Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq72314 105 5e-18
seq196472 95.1 8e-15
seq224189 89.7 4e-13
seq140002 89.7 4e-13
seq24881 89.7 4e-13
seq146937 82.4 5e-11
>seq72314
Length=63918
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| || |||||||| || | | || |||| |||||||||||||| |||||
Sbjct 54736 TCCTTTTGAATGTTATAATCTGCGAGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAA 54677
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | || || ||||| ||||| |||| |
Sbjct 54676 ATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTA 54617
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
||| ||||| | |||||| || |||| || || ||||| || ||||| ||||| ||
Sbjct 54616 TCTATCGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACA 54557
Query 39709 AAGATCTGCAT 39719
|||||||||||
Sbjct 54556 AAGATCTGCAT 54546
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| || ||||| || || | | | |||| |||||||||||||| |||||
Sbjct 55648 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAA 55589
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | |||||| || || ||||| |||| |
Sbjct 55588 ATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTG 55529
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | ||||| | ||| || || ||||| || |||||||| || ||||| || || ||
Sbjct 55528 TCAATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACA 55469
Query 39709 AAGATCTGCAT 39719
||||| |||||
Sbjct 55468 AAGATTTGCAT 55458
>seq196472
Length=12654
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || |||||||| |||| | ||| |||| || ||||| ||||| ||||
Sbjct 8119 TTCCTTCTGGATGTTATAATCAGCCAGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAA 8060
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
||| | | ||||||||||| || | || || ||||| ||||| |||| |
Sbjct 8059 AATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATTTTAGCCTTAACATT 8000
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
||| ||||| | ||| || || ||||| || |||||||| || ||||| || || ||
Sbjct 7999 GTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAAC 7940
Query 39708 GAAGATCTGCAT 39719
|| || |||||
Sbjct 7939 AAAAATTTGCAT 7928
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| |||||
Sbjct 7890 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 7831
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | || || |||| || | ||||| || || ||||| ||||| |
Sbjct 7830 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCTTTAACGTTA 7771
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | ||||| | ||| || || ||||| || |||||||| || || || || || ||
Sbjct 7770 TCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACA 7711
Query 39709 AAGATCTGCAT 39719
|| || |||||
Sbjct 7710 AATATTTGCAT 7700
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| || || ||||| || | | ||| |||| || | |||||| || ||||
Sbjct 7662 TCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTGCAAAG 7603
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646
|| ||||| || ||||| | || | ||||||||||| ||||| ||||| | |
Sbjct 7602 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAACATTG 7543
Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
||| | ||||||| || || || || | ||| || || || || || | ||| ||||
Sbjct 7542 TCGATC--GTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTA 7485
Query 39707 CGAAGATCTGCAT 39719
| |||||||||||
Sbjct 7484 CAAAGATCTGCAT 7472
>seq224189
Length=50442
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | |||| || || || || || ||||| ||
Sbjct 16401 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCT 16460
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | || |||| || | ||||| ||| | ||||| | |||||||| |||| ||
Sbjct 16461 AGAGTTCGACCATCCTCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG 16520
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| |||||| ||||| || ||| || | ||| | | | |||||| | | ||| ||
Sbjct 16521 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 16579
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || || |||||||| | ||||| ||||||||||||||
Sbjct 16580 CTCAAGGGTGATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 16627
>seq140002
Length=100703
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||||||| || || | || | ||| || ||||| || || || || ||
Sbjct 55559 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 55500
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || | ||| || || |||| || || | |||||||||| ||
Sbjct 55499 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 55440
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||| ||||| || ||| |||| | | | |||||||| ||| || ||
Sbjct 55439 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 55380
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || |||||||||||||| |||||||||||
Sbjct 55379 TCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 55333
>seq24881
Length=242481
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | |||| || || | || || ||||| ||
Sbjct 141210 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCT 141151
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | || |||| || | ||||| ||| | ||||| | |||||||| ||||| ||
Sbjct 141150 AGAGTTCGACCATCCTCAAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGG 141091
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||| ||||| || ||| || | | | | |||||| | | ||| ||
Sbjct 141090 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACC 141031
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||||| || |||||||| | ||||| ||||||||||||||
Sbjct 141030 TCAAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 140984
>seq146937
Length=209544
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | |||| ||| || || || || |||||||| |||
Sbjct 84078 CCACCACGGAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCC 84019
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | |||| ||||| || ||||| ||||||| | | ||||||||||| |||
Sbjct 84018 AGAGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGA 83959
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| || || ||||| | | | || | || | || ||| || || || | || |||
Sbjct 83958 ATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCAATA--GTATCGGAACTCTCC 83902
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || || || || || || ||||||||
Sbjct 83901 ACCTCCAAAGTGATGGTTTTCCCTGTCAACGTCTTCACAAAAATCTGCAT 83852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346294621134494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |