Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq72314 105 5e-18 seq196472 95.1 8e-15 seq224189 89.7 4e-13 seq140002 89.7 4e-13 seq24881 89.7 4e-13 seq146937 82.4 5e-11 >seq72314 Length=63918 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || |||||||| || | | || |||| |||||||||||||| ||||| Sbjct 54736 TCCTTTTGAATGTTATAATCTGCGAGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAA 54677 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || || ||||| ||||| |||| | Sbjct 54676 ATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTA 54617 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||| | |||||| || |||| || || ||||| || ||||| ||||| || Sbjct 54616 TCTATCGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACA 54557 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 54556 AAGATCTGCAT 54546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | | |||| |||||||||||||| ||||| Sbjct 55648 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAA 55589 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| || || ||||| |||| | Sbjct 55588 ATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTG 55529 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 55528 TCAATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACA 55469 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 55468 AAGATTTGCAT 55458 >seq196472 Length=12654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || |||||||| |||| | ||| |||| || ||||| ||||| |||| Sbjct 8119 TTCCTTCTGGATGTTATAATCAGCCAGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAA 8060 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | | ||||||||||| || | || || ||||| ||||| |||| | Sbjct 8059 AATCAGCCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATTTTAGCCTTAACATT 8000 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 7999 GTCTATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAAC 7940 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 7939 AAAAATTTGCAT 7928 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 7890 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 7831 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | || || |||| || | ||||| || || ||||| ||||| | Sbjct 7830 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCTTTAACGTTA 7771 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || || || || || || Sbjct 7770 TCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACA 7711 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 7710 AATATTTGCAT 7700 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || ||||| || | | ||| |||| || | |||||| || |||| Sbjct 7662 TCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTGCAAAG 7603 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || ||||| || ||||| | || | ||||||||||| ||||| ||||| | | Sbjct 7602 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAACATTG 7543 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||||| || || || || | ||| || || || || || | ||| |||| Sbjct 7542 TCGATC--GTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTA 7485 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 7484 CAAAGATCTGCAT 7472 >seq224189 Length=50442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| || || || || || ||||| || Sbjct 16401 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCT 16460 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | ||||| ||| | ||||| | |||||||| |||| || Sbjct 16461 AGAGTTCGACCATCCTCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG 16520 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 16521 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 16579 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||| | ||||| |||||||||||||| Sbjct 16580 CTCAAGGGTGATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 16627 >seq140002 Length=100703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || || | || | ||| || ||||| || || || || || Sbjct 55559 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 55500 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||| || || |||| || || | |||||||||| || Sbjct 55499 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 55440 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| |||| | | | |||||||| ||| || || Sbjct 55439 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 55380 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || |||||||||||||| ||||||||||| Sbjct 55379 TCGAGAGTGATAGTCTTCCCTGTTAAAGTTTTTACAAAGATCTGCAT 55333 >seq24881 Length=242481 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| || || | || || ||||| || Sbjct 141210 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCT 141151 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | ||||| ||| | ||||| | |||||||| ||||| || Sbjct 141150 AGAGTTCGACCATCCTCAAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGG 141091 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||| || | | | | |||||| | | ||| || Sbjct 141090 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACC 141031 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| | ||||| |||||||||||||| Sbjct 141030 TCAAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 140984 >seq146937 Length=209544 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| || || || || |||||||| ||| Sbjct 84078 CCACCACGGAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCC 84019 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||| || ||||| ||||||| | | ||||||||||| ||| Sbjct 84018 AGAGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGA 83959 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | | | || | || | || ||| || || || | || ||| Sbjct 83958 ATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCAATA--GTATCGGAACTCTCC 83902 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || || || || || || || |||||||| Sbjct 83901 ACCTCCAAAGTGATGGTTTTCCCTGTCAACGTCTTCACAAAAATCTGCAT 83852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346294621134494