Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq208208 131 2e-25 seq243809 127 3e-24 seq207449 111 2e-19 seq162102 91.5 2e-13 >seq208208 Length=133897 Score = 131 bits (144), Expect = 2e-25 Identities = 274/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 37809 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 37750 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 37749 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 37692 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 37691 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 37634 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 37633 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 37575 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 37574 AGATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 37515 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || || || || || Sbjct 37514 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCC 37456 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 ||||| || ||| | || || ||||| |||||| Sbjct 37455 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 37417 >seq243809 Length=169429 Score = 127 bits (140), Expect = 3e-24 Identities = 201/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || ||||| || || |||||||| || || | ||||||||| | Sbjct 56241 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 56184 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||| Sbjct 56183 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 56124 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 56123 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 56068 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 56067 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 56008 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 56007 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 55966 >seq207449 Length=20620 Score = 111 bits (122), Expect = 2e-19 Identities = 196/283 (69%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| |||||||| ||||| |||||||| || || | |||||||| | Sbjct 9401 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 9456 Query 16035 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 9457 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 9514 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || || ||||| || || ||||| | ||||| ||| | || |||| Sbjct 9515 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 9572 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 9573 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 9632 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || | |||| || | ||| |||||||| ||||| || Sbjct 9633 CACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 9675 >seq162102 Length=94307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 31633 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31574 Query 15947 GATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 ||||||| | || |||||| | |||||||||||| || || | ||| |||||| Sbjct 31573 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 31516 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 31515 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 31456 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||||||||||||||| ||||| | || ||| ||||| || | || | Sbjct 31455 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 31396 Query 16125 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 16168 |||| || || || | || |||||||||||||||||||| || || Sbjct 31395 TCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 31352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618772179140960