Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq207449 84.2 3e-11 seq182182 82.4 9e-11 seq171142 82.4 9e-11 >seq207449 Length=20620 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||||||||| | ||||| || || ||||| || | |||||| || | Sbjct 9400 GAACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 9459 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | |||||| | | | | || ||||| ||||||||||| || || || |||| Sbjct 9460 TCCAAGC-CCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 9518 Query 11711 ACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 | || | || || | |||| || || | || | ||| | ||||| ||||| Sbjct 9519 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCC 9577 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 || |||| |||||| || | || || | ||| ||| | || || ||| | |||||| Sbjct 9578 ACAAACAACTCAACAAACTCTGATGCTGCACA-TGAGAAAAATGGCACACCTGCCTCACC 9636 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTG 11869 ||| | |||| ||| | || |||||||| |||||||||| Sbjct 9637 AGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGGTG 9677 >seq182182 Length=50133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 16248 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 16189 Query 136777 GGGAACAGCTTTT 136789 |||| |||||||| Sbjct 16188 GGGACCAGCTTTT 16176 >seq171142 Length=181843 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 7862 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7921 Query 136777 GGGAACAGCTTTTAGA-TATATTTT 136800 |||| || ||||| || | |||||| Sbjct 7922 GGGACCACCTTTTTGAGTGTATTTT 7946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587106604900400