Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq207449 84.2 3e-11
seq182182 82.4 9e-11
seq171142 82.4 9e-11
>seq207449
Length=20620
Score = 84.2 bits (92), Expect = 3e-11
Identities = 192/281 (68%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650
||| || ||||||||||| | ||||| || || ||||| || | |||||| || |
Sbjct 9400 GAACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 9459
Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710
| | | |||||| | | | | || ||||| ||||||||||| || || || ||||
Sbjct 9460 TCCAAGC-CCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 9518
Query 11711 ACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769
| || | || || | |||| || || | || | ||| | ||||| |||||
Sbjct 9519 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCC 9577
Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828
|| |||| |||||| || | || || | ||| ||| | || || ||| | ||||||
Sbjct 9578 ACAAACAACTCAACAAACTCTGATGCTGCACA-TGAGAAAAATGGCACACCTGCCTCACC 9636
Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTG 11869
||| | |||| ||| | || |||||||| ||||||||||
Sbjct 9637 AGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGGTG 9677
>seq182182
Length=50133
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| | ||||| | | |||||| |||||||||||||||
Sbjct 16248 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 16189
Query 136777 GGGAACAGCTTTT 136789
|||| ||||||||
Sbjct 16188 GGGACCAGCTTTT 16176
>seq171142
Length=181843
Score = 82.4 bits (90), Expect = 9e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| | ||||| | | |||||| |||||||||||||||
Sbjct 7862 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7921
Query 136777 GGGAACAGCTTTTAGA-TATATTTT 136800
|||| || ||||| || | ||||||
Sbjct 7922 GGGACCACCTTTTTGAGTGTATTTT 7946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587106604900400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |